Evidence map›Paper›PMID 31481721›Full record

ArticleScientific reports2019

High-throughput-compatible assays using a genetically-encoded calcium indicator.

Nyantsz Wu, Walter K Nishioka, Noël C Derecki, Michael P Maher

Open access · goldAbstract readComparative Study
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
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  6. A nondestructive membrane engineering method using an amphiphilic polymer.Protein science : a publication of the Protein Society · 2024
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  10. The mitochondrial CaScientific reports · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Nyantsz WuJanssen Research & Development, LLC, San Diego, CA, 92121, USA.
Walter K NishiokaJanssen Research & Development, LLC, San Diego, CA, 92121, USA.
Noël C DereckiJanssen Research & Development, LLC, San Diego, CA, 92121, USA.
Michael P MaherJanssen Research & Development, LLC, San Diego, CA, 92121, USA. mmaher1@its.jnj.com.ORCID http://orcid.org/0000-0001-9138-0448
Janssen (United States) · USJanssen (Belgium) · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Measurement of intracellular calcium in live cells is a key component of a wide range of basic life science research, and crucial for many high-throughput assays used in modern drug discovery. Synthetic calcium indicators have become the industry standard, due their ease of use, high reliability, wide dynamic range, and availability of a large variety of spectral and chemical properties. Genetically-encoded calcium indicators (GECIs) have been optimized to the point where their performance rivals that of synthetic calcium indicators in many applications. Stable expression of a GECI has distinct advantages over synthetic calcium indicators in terms of reagent cost and simplification of the assay process. We generated a clonal cell line constitutively expressing GCaMP6s; high expression of the GECI was driven by coupling to a blasticidin resistance gene with a self-cleaving cis-acting hydrolase element (CHYSEL) 2A peptide. Here, we compared the performance of the GECI GCaMP6s to the synthetic calcium indicator fluo-4 in a variety of assay formats. We demonstrate that the pharmacology of ion channel and GPCR ligands as determined using the two indicators is highly similar, and that GCaMP6s is viable as a direct replacement for a synthetic calcium indicator.

Indexed as

Biological AssayCalcium SignalingAniline CompoundsCalciumCalmodulinHEK293 CellsHumansReceptors, G-Protein-CoupledRecombinant Fusion ProteinsXanthenesAniline CompoundsCalciumCalmodulinFluo 4Receptors, G-Protein-CoupledRecombinant Fusion ProteinsXanthenes

Identifiers

PMID31481721
PMCPMC6722131
OpenAlexW2972052582

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.