Evidence map›Paper›PMID 31481545›Full record

ArticleGut2020

Single-cell transcriptional analyses of spasmolytic polypeptide-expressing metaplasia arising from acute drug injury and chronic inflammation in the stomach.

Kevin A Bockerstett, Scott A Lewis, Kyle J Wolf, Christine N Noto, Nicholas M Jackson, Eric L Ford, Tae-Hyuk Ahn, Richard J DiPaolo

Open access · bronzeAbstract read
In one paragraph

Article in Gut, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed, 1 pooled it
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 1 synthesis or guideline pooled it, 90 citations in OpenAlex.

  1. Pooled it
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  9. Regulation of STK38 by autophagy governs YAP1 activity during paligenosis.Proceedings of the National Academy of Sciences of the United States of America · 2026
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7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Kevin A Bockerstett *Department of Molecular Microbiology and Immunology, Saint Louis University School of Medicine, St. Louis, Missouri, USA.ORCID 0000-0002-5010-4970
Scott A Lewis *Department of Computer Science, Saint Louis University, Saint Louis, Missouri, USA.
Kyle J WolfDepartment of Molecular Microbiology and Immunology, Saint Louis University School of Medicine, St. Louis, Missouri, USA.
Christine N NotoDepartment of Molecular Microbiology and Immunology, Saint Louis University School of Medicine, St. Louis, Missouri, USA.
Nicholas M JacksonDepartment of Molecular Microbiology and Immunology, Saint Louis University School of Medicine, St. Louis, Missouri, USA.
Eric L FordDepartment of Molecular Microbiology and Immunology, Saint Louis University School of Medicine, St. Louis, Missouri, USA.
Tae-Hyuk AhnDepartment of Computer Science, Saint Louis University, Saint Louis, Missouri, USA.
Richard J DiPaoloDepartment of Molecular Microbiology and Immunology, Saint Louis University School of Medicine, St. Louis, Missouri, USA richard.dipaolo@health.slu.edu.
Saint Louis University · US

Funding

Pharmacological Sciences Training GrantT32GM008306 · NIGMS · SAINT LOUIS UNIVERSITY · PI EGAN, TERRANCE M, WALKER, JOHN K. · 1990 to 2020
$3.6M
The Role of EBI3 in Regulating Gastritis and Gastric CarcinogenesisR01DK110406 · NIDDK · SAINT LOUIS UNIVERSITY · PI DIPAOLO, RICHARD J · 2016 to 2020
$2.3M
The Role of Epstein-Barr Virus-Induced Gene 3 (EBI3) in Preventing Gastric Atrophy and MetaplasiaF30DK118873 · NIDDK · SAINT LOUIS UNIVERSITY · PI BOCKERSTETT, KEVIN A · 2018 to 2021
$157k
NIDDK NIH HHS F30 DK118873NIDDK NIH HHS R01 DK110406NIGMS NIH HHS T32 GM008306
6 · The paper itself

Abstract

objectiveSpasmolytic polypeptide-expressing metaplasia (SPEM) is a regenerative lesion in the gastric mucosa and is a potential precursor to intestinal metaplasia/gastric adenocarcinoma in a chronic inflammatory setting. The goal of these studies was to define the transcriptional changes associated with SPEM at the individual cell level in response to acute drug injury and chronic inflammatory damage in the gastric mucosa.

designEpithelial cells were isolated from the gastric corpus of healthy stomachs and stomachs with drug-induced and inflammation-induced SPEM lesions. Single cell RNA sequencing (scRNA-seq) was performed on tissue samples from each of these settings. The transcriptomes of individual epithelial cells from healthy, acutely damaged and chronically inflamed stomachs were analysed and compared.

resultsscRNA-seq revealed a population Mucin 6 (

conclusionsThese data necessitate an expansion of the definition of SPEM to include

Indexed as

AnimalsFemaleFluorescent Antibody TechniqueGastric MucosaGastritisGene Expression ProfilingIn Situ HybridizationIntercellular Signaling Peptides and ProteinsMaleMetaplasiaMiceMice, Inbred BALB CMucin-6Sequence Analysis, RNASingle-Cell AnalysisTamoxifenIntercellular Signaling Peptides and ProteinsMuc6 protein, mouseMucin-6spasmolytic polypeptideTamoxifenTFF2 protein, mouseTrefoil Factor-2GASTRIC CANCERGASTRIC METAPLASIAGASTRITIS

Identifiers

PMID31481545
PMCPMC7282188
OpenAlexW2972278340

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.