Evidence map›Paper›PMID 31481514›Full record

ArticleThe Journal of general physiology2019

Binding and structural asymmetry governs ligand sensitivity in a cyclic nucleotide-gated ion channel.

Leo C T Ng, Meiying Zhuang, Filip Van Petegem, Yue Xian Li, Eric A Accili

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of general physiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. 30th Annual GPPharmaceuticals (Basel, Switzerland) · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Leo C T NgDepartment of Cellular and Physiological Sciences, University of British Columbia, Vancouver, BC, Canada.
Meiying ZhuangDepartment of Cellular and Physiological Sciences, University of British Columbia, Vancouver, BC, Canada.
Filip Van PetegemDepartment of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada.ORCID 0000-0003-2728-8537
Yue Xian LiDepartment of Mathematics, University of British Columbia, Vancouver, BC, Canada.
Eric A AcciliDepartment of Cellular and Physiological Sciences, University of British Columbia, Vancouver, BC, Canada.ORCID 0000-0003-4450-1571
University of British Columbia · CA

Funding

CIHR MOP-106655
6 · The paper itself

Abstract

Hyperpolarization-activated cyclic nucleotide-gated (HCN) channels open more easily when cAMP or cGMP bind to a domain in the intracellular C-terminus in each of four identical subunits. How sensitivity of the channels to these ligands is determined is not well understood. Here, we apply a mathematical model, which incorporates negative cooperativity, to gating and mutagenesis data available in the literature and combine the results with binding data collected using isothermal titration calorimetry. This model recapitulates the concentration-response data for the effects of cAMP and cGMP on wild-type HCN2 channel opening and, remarkably, predicts the concentration-response data for a subset of mutants with single-point amino acid substitutions in the binding site. Our results suggest that ligand sensitivity is determined by negative cooperativity and asymmetric effects on structure and channel opening, which are tuned by ligand-specific interactions and residues within the binding site.

Indexed as

Ion Channel GatingModels, BiologicalCalorimetryCloning, MolecularCyclic AMPCyclic GMPHumansHyperpolarization-Activated Cyclic Nucleotide-Gated ChannelsCyclic AMPCyclic GMPHyperpolarization-Activated Cyclic Nucleotide-Gated Channels

Identifiers

PMID31481514
PMCPMC6785730
OpenAlexW2971412197

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.