Evidence map›Paper›PMID 31481467›Full record

ArticleThe Journal of biological chemistry2019

A comparative analysis of Smad-responsive motifs identifies multiple regulatory inputs for TGF-β transcriptional activation.

Yuka Itoh, Daizo Koinuma, Chiho Omata, Tomohiro Ogami, Mitsuyoshi Motizuki, So-Ichi Yaguchi, Takuma Itoh, Kunio Miyake, Shuichi Tsutsumi, Hiroyuki Aburatani and 3 more

Open access · hybridAbstract readComparative Study
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 37 citations in OpenAlex.

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  11. Analysis of the DNA-binding properties of TGF-β-activated Smad complexes unveils a possible molecular basis for cellular context-dependent signaling.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2024
    Article
  12. Article
  13. Myocardin regulates fibronectin expression and secretion from human pleural mesothelial cells.American journal of physiology. Lung cellular and molecular physiology · 2024
    Article
  14. Article
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  16. Review
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  20. SMAD4 Feedback Activates the Canonical TGF-β Family Signaling Pathways.International journal of molecular sciences · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Yuka ItohDepartment of Biochemistry, Graduate School of Medicine, University of Yamanashi, Yamanashi 409-3898, Japan.
Daizo KoinumaDepartment of Molecular Pathology, Graduate School of Medicine, The University of Tokyo, Tokyo 113-0033, Japan.
Chiho OmataDepartment of Biochemistry, Graduate School of Medicine, University of Yamanashi, Yamanashi 409-3898, Japan.
Tomohiro OgamiDepartment of Molecular Pathology, Graduate School of Medicine, The University of Tokyo, Tokyo 113-0033, Japan.
Mitsuyoshi MotizukiDepartment of Biochemistry, Graduate School of Medicine, University of Yamanashi, Yamanashi 409-3898, Japan.
So-Ichi YaguchiDepartment of Biochemistry, Graduate School of Medicine, University of Yamanashi, Yamanashi 409-3898, Japan.
Takuma ItohDepartment of Biochemistry, Graduate School of Medicine, University of Yamanashi, Yamanashi 409-3898, Japan.
Kunio MiyakeDepartment of Social Medicine, Graduate School of Medicine, University of Yamanashi, Yamanashi 409-3898, Japan.
Shuichi TsutsumiGenome Science Division, Research Center for Advanced Science and Technology (RCAST), The University of Tokyo, Tokyo 153-8904, Japan.
Hiroyuki AburataniGenome Science Division, Research Center for Advanced Science and Technology (RCAST), The University of Tokyo, Tokyo 153-8904, Japan.
Masao SaitohDepartment of Biochemistry, Graduate School of Medicine, University of Yamanashi, Yamanashi 409-3898, Japan.
Kohei MiyazonoDepartment of Molecular Pathology, Graduate School of Medicine, The University of Tokyo, Tokyo 113-0033, Japan.
Keiji MiyazawaDepartment of Biochemistry, Graduate School of Medicine, University of Yamanashi, Yamanashi 409-3898, Japan kmiyazawa@yamanashi.ac.jp.ORCID 0000-0002-7835-7718
University of Yamanashi · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Smad proteins are transcriptional regulators activated by TGF-β. They are known to bind to two distinct Smad-responsive motifs, namely the Smad-binding element (SBE) (5'-GTCTAGAC-3') and CAGA motifs (5'-AGCCAGACA-3' or 5'-TGTCTGGCT-3'). However, the mechanisms by which these motifs promote Smad activity are not fully elucidated. In this study, we performed DNA CASTing, binding assays, ChIP sequencing, and quantitative RT-PCR to dissect the details of Smad binding and function of the SBE and CAGA motifs. We observed a preference for Smad3 to bind CAGA motifs and Smad4 to bind SBE, and that either one SBE or a triple-CAGA motif forms a

Indexed as

Amino Acid MotifsBase SequenceBinding SitesHumansProtein BindingResponse ElementsSmad2 ProteinSmad3 ProteinSmad4 ProteinTranscriptional ActivationTransforming Growth Factor betaSmad2 ProteinSMAD2 protein, humanSmad3 ProteinSMAD3 protein, humanSmad4 ProteinSMAD4 protein, humanTransforming Growth Factor betaChIP-sequencing (ChIP-seq)DNA-binding proteinsignal transductionSMAD transcription factortranscription factortranscription regulationtransforming growth factor β (TGF-β)

Identifiers

PMID31481467
PMCPMC6802517
OpenAlexW2972151198

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.