Evidence map›Paper›PMID 31479948›Full record

ArticleJournal of molecular graphics & modelling2019

The influence of biotinylation on the ability of a computer designed protein to detect B-cells producing anti-HIV-1 2F5 antibodies.

Danilo F Coêlho, Matheus V F Ferraz, Ernesto T A Marques, Roberto D Lins, Isabelle F T Viana

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular graphics & modelling, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 4 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Danilo F CoêlhoAggeu Magalhães Institute, Oswaldo Cruz Foundation, Recife, PE, 50670-465, Brazil; Department of Fundamental Chemistry, Federal University of Pernambuco, Recife, PE, 50740-540, Brazil.
Matheus V F FerrazAggeu Magalhães Institute, Oswaldo Cruz Foundation, Recife, PE, 50670-465, Brazil; Department of Fundamental Chemistry, Federal University of Pernambuco, Recife, PE, 50740-540, Brazil.
Ernesto T A MarquesAggeu Magalhães Institute, Oswaldo Cruz Foundation, Recife, PE, 50670-465, Brazil; Department of Infectious Diseases and Microbiology, University of Pittsburgh, Pittsburgh, PA, 15261, USA.
Roberto D LinsAggeu Magalhães Institute, Oswaldo Cruz Foundation, Recife, PE, 50670-465, Brazil; Department of Fundamental Chemistry, Federal University of Pernambuco, Recife, PE, 50740-540, Brazil. Electronic address: roberto.lins@cpqam.fiocruz.br.
Isabelle F T VianaAggeu Magalhães Institute, Oswaldo Cruz Foundation, Recife, PE, 50670-465, Brazil. Electronic address: isabelle.viana@cpqam.fiocruz.br.
Universidade Federal de Pernambuco · BRFundação Oswaldo Cruz · BR

Funding

University of Pittsburgh Multicenter AIDS Cohort Study (MACS)U01AI035041 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MARTINSON, JEREMY JAMES, RINALDO, CHARLES R · 1993 to 2018
$71.4M
NIAID NIH HHS U01 AI035041
6 · The paper itself

Abstract

Antibodies against the HIV-1 2F5 epitope are known as one of the most powerful and broadly protective anti-HIV antibodies. Therefore, vaccine strategies that include the 2F5 epitope in their formulation require a robust method to detect specific anti-2F5 antibody production by B cells. Towards this goal, we have biotinylated a previously reported computer-designed protein carrying the HIV-1 2F5 epitope aiming the further development of a platform to detect human B-cells expressing anti-2F5 antibodies through flow cytometry. Biophysical and immunological properties of our devised protein were characterized by computer simulation and experimental methods. Biotinylation did not affect folding and improved protein stability and solubility. The biotinylated protein exhibited similar binding affinity trends compared to its unbiotinylated counterpart and was recognized by anti-HIV-1 2F5 antibodies expressed on the surface of patient-derived peripheral blood mononuclear cells. Moreover, we present a high affinity marker for the identification of epitope-specific B cells that can be used to measure the efficacy of vaccine strategies based on the HIV-1 envelope protein.

Indexed as

BiotinylationMolecular Dynamics SimulationAIDS VaccinesAntibodies, MonoclonalAntibodies, NeutralizingB-LymphocytesComputer SimulationEpitopesHIV-1HIV AntibodiesHumansLeukocytes, MononuclearAIDS VaccinesAntibodies, MonoclonalAntibodies, NeutralizingEpitopesHIV AntibodiesAntigenBiotinMolecular dynamicsTop7Vaccine

Identifiers

PMID31479948
PMCPMC7887850
OpenAlexW2970409801

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.