Evidence map›Paper›PMID 31479498›Full record

ArticlePLoS pathogens2019

Molecular basis for functional diversity among microbial Nep1-like proteins.

Tea Lenarčič, Katja Pirc, Vesna Hodnik, Isabell Albert, Jure Borišek, Alessandra Magistrato, Thorsten Nürnberger, Marjetka Podobnik, Gregor Anderluh

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
5.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. SsNEP2 Plays a Role in the Interaction BetweenJournal of fungi (Basel, Switzerland) · 2025
    Article
  4. Volatile Formulation ofIndian journal of microbiology · 2024
    Article
  5. Review
  6. Review
  7. Advances in Fungal Elicitor-Triggered Plant Immunity.International journal of molecular sciences · 2022
    Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Journal of fungi (Basel, Switzerland) · 2022
    Article
  13. Article
  14. Article
  15. Nep1-Like Proteins From the Biocontrol AgentFrontiers in plant science · 2022
    Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Frontiers in microbiology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 4 countries.

Tea LenarčičDepartment of Molecular Biology and Nanobiotechnology, National Institute of Chemistry, Hajdrihova, Ljubljana, Slovenia.ORCID 0000-0003-2590-0323
Katja PircDepartment of Molecular Biology and Nanobiotechnology, National Institute of Chemistry, Hajdrihova, Ljubljana, Slovenia.ORCID 0000-0002-1839-2044
Vesna HodnikDepartment of Molecular Biology and Nanobiotechnology, National Institute of Chemistry, Hajdrihova, Ljubljana, Slovenia.
Isabell AlbertCenter of Plant Molecular Biology (ZMBP), Eberhard-Karls-University Tübingen, Auf der Morgenstelle, Tübingen, Germany.ORCID 0000-0003-2223-496X
Jure BorišekCNR-IOM-Democritos at International School for Advanced Studies (SISSA), Trieste, Italy.
Alessandra MagistratoCNR-IOM-Democritos at International School for Advanced Studies (SISSA), Trieste, Italy.ORCID 0000-0002-2003-1985
Thorsten NürnbergerCenter of Plant Molecular Biology (ZMBP), Eberhard-Karls-University Tübingen, Auf der Morgenstelle, Tübingen, Germany.
Marjetka PodobnikDepartment of Molecular Biology and Nanobiotechnology, National Institute of Chemistry, Hajdrihova, Ljubljana, Slovenia.
Gregor AnderluhDepartment of Molecular Biology and Nanobiotechnology, National Institute of Chemistry, Hajdrihova, Ljubljana, Slovenia.ORCID 0000-0002-9916-8465
National Institute of Chemistry · SIScuola Internazionale Superiore di Studi Avanzati · ITUniversity of Johannesburg · ZAUniversity of Ljubljana · SIUniversity of Tübingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Necrosis and ethylene-inducing peptide 1 (Nep1)-like proteins (NLPs) are secreted by several phytopathogenic microorganisms. They trigger necrosis in various eudicot plants upon binding to plant sphingolipid glycosylinositol phosphorylceramides (GIPC). Interestingly, HaNLP3 from the obligate biotroph oomycete Hyaloperonospora arabidopsidis does not induce necrosis. We determined the crystal structure of HaNLP3 and showed that it adopts the NLP fold. However, the conformations of the loops surrounding the GIPC headgroup-binding cavity differ from those of cytotoxic Pythium aphanidermatum NLPPya. Essential dynamics extracted from μs-long molecular dynamics (MD) simulations reveals a limited conformational plasticity of the GIPC-binding cavity in HaNLP3 relative to toxic NLPs. This likely precludes HaNLP3 binding to GIPCs, which is the underlying reason for the lack of toxicity. This study reveals that mutations at key protein regions cause a switch between non-toxic and toxic phenotypes within the same protein scaffold. Altogether, these data provide evidence that protein flexibility is a distinguishing trait of toxic NLPs and highlight structural determinants for a potential functional diversification of non-toxic NLPs utilized by biotrophic plant pathogens.

Indexed as

Amino Acid SequenceEthylenesNecrosisOomycetesPeptidesPeronosporaPlant DiseasesProteinsRibosomal ProteinsSaccharomyces cerevisiae ProteinsEMG1 protein, S cerevisiaeethyleneEthylenesPeptidesProteinsRibosomal ProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID31479498
PMCPMC6743777
OpenAlexW2972016620

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.