Evidence map›Paper›PMID 31479451›Full record

ArticlePLoS genetics2019

NME5 frameshift variant in Alaskan Malamutes with primary ciliary dyskinesia.

Linda Anderegg, Michelle Im Hof Gut, Udo Hetzel, Elizabeth W Howerth, Fabienne Leuthard, Kaisa Kyöstilä, Hannes Lohi, Louise Pettitt, Cathryn Mellersh, Katie M Minor and 5 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Functional Diversity and Emerging Roles of Human NME/NDPK Group II Proteins.International journal of molecular sciences · 2026
    Review
  4. Article
  5. Article
  6. Review
  7. Mapping the Most Common Founder Variant inJournal of clinical medicine · 2023
    Article
  8. International journal of molecular sciences · 2023
    Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Motile ciliopathies.Nature reviews. Disease primers · 2020
    Review
  15. Article
  16. Article
  17. Article
  18. Genes · 2019
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 8 institutions in 4 countries.

Linda AndereggInstitute of Genetics, Vetsuisse Faculty, University of Bern,Bern, Switzerland.
Michelle Im Hof GutKleintierpraxis Laupeneck, Bern, Switzerland.
Udo HetzelInstitute of Veterinary Pathology, Vetsuisse Faculty, University of Zurich, Zurich, Switzerland.ORCID 0000-0001-9142-560X
Elizabeth W HowerthDepartment of Pathology, College of Veterinary Medicine, University of Georgia, Athens GA, United States of America.
Fabienne LeuthardInstitute of Genetics, Vetsuisse Faculty, University of Bern,Bern, Switzerland.
Kaisa KyöstiläDepartment of Veterinary Biosciences, University of Helsinki, Helsinki, Finland.
Hannes LohiDepartment of Veterinary Biosciences, University of Helsinki, Helsinki, Finland.
Louise PettittKennel Club Genetics Centre, Animal Health Trust, Newmarket, Suffolk CB UU, United Kingdom.ORCID 0000-0003-1553-5027
Cathryn MellershKennel Club Genetics Centre, Animal Health Trust, Newmarket, Suffolk CB UU, United Kingdom.ORCID 0000-0002-2336-0370
Katie M MinorDepartment of Veterinary and Biomedical Sciences, University of Minnesota, Saint Paul, MN, United States of America.ORCID 0000-0002-5472-5088
James R MickelsonDepartment of Veterinary and Biomedical Sciences, University of Minnesota, Saint Paul, MN, United States of America.ORCID 0000-0001-6951-0234
Kevin BatcherDepartment of Population Health and Reproduction, University of California-Davis, Davis, CA, United States of America.ORCID 0000-0002-1048-1130
Danika BannaschDepartment of Population Health and Reproduction, University of California-Davis, Davis, CA, United States of America.ORCID 0000-0002-7614-7207
Vidhya JagannathanInstitute of Genetics, Vetsuisse Faculty, University of Bern,Bern, Switzerland.
Tosso LeebInstitute of Genetics, Vetsuisse Faculty, University of Bern,Bern, Switzerland.ORCID 0000-0003-0553-4880
University of Bern · CHAnimal Health Trust · GBUniversity of California, Davis · USUniversity of Helsinki · FIUniversity of Minnesota · USBerner Augenklinik am Lindenhofspital · CHUniversity of Georgia · USUniversity of Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Primary ciliary dyskinesia (PCD) is a hereditary defect of motile cilia in humans and several domestic animal species. Typical clinical findings are chronic recurrent infections of the respiratory tract and fertility problems. We analyzed an Alaskan Malamute family, in which two out of six puppies were affected by PCD. The parents were unaffected suggesting autosomal recessive inheritance. Linkage and homozygosity mapping defined critical intervals comprising ~118 Mb. Whole genome sequencing of one case and comparison to 601 control genomes identified a disease associated frameshift variant, c.43delA, in the NME5 gene encoding a sparsely characterized protein associated with ciliary function. Nme5-/- knockout mice exhibit doming of the skull, hydrocephalus and sperm flagellar defects. The genotypes at NME5:c.43delA showed the expected co-segregation with the phenotype in the Alaskan Malamute family. An additional unrelated Alaskan Malamute with PCD and hydrocephalus that became available later in the study was also homozygous mutant at the NME5:c.43delA variant. The mutant allele was not present in more than 1000 control dogs from different breeds. Immunohistochemistry demonstrated absence of the NME5 protein from nasal epithelia of an affected dog. We therefore propose NME5:c.43delA as the most likely candidate causative variant for PCD in Alaskan Malamutes. These findings enable genetic testing to avoid the unintentional breeding of affected dogs in the future. Furthermore, the results of this study identify NME5 as a novel candidate gene for unsolved human PCD and/or hydrocephalus cases.

Indexed as

AnimalsBreedingCiliaCiliary Motility DisordersDogsFemaleFrameshift MutationGenetic LinkageGenetic TestingGenotypeHumansMaleMutationNM23 Nucleoside Diphosphate KinasesPhenotypeWhole Genome SequencingNM23 Nucleoside Diphosphate KinasesNME5 protein, human

Identifiers

PMID31479451
PMCPMC6743793
OpenAlexW2971745915

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.