Evidence map›Paper›PMID 31478108›Full record

ArticleJournal of molecular modeling2019

New paths of cyanogenesis from enzymatic-promoted cleavage of β-cyanoglucosides are suggested by a mixed DFT/QTAIM approach.

Rafael Díaz-Sobac, Alma Vázquez-Luna, Eduardo Rivadeneyra-Domínguez, Juan Francisco Rodríguez-Landa, Tomás Guerrero, J Sergio Durand-Niconoff

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In one paragraph

Article in Journal of molecular modeling, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.9field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Rafael Díaz-SobacInstituto de Ciencias Básicas, Universidad Veracruzana, Dr. Luis Castelazo Ayala s/n, col. Industrial Ánimas, 91190, Xalapa, Ver, Mexico.ORCID http://orcid.org/0000-0002-0582-0898
Alma Vázquez-LunaInstituto de Ciencias Básicas, Universidad Veracruzana, Dr. Luis Castelazo Ayala s/n, col. Industrial Ánimas, 91190, Xalapa, Ver, Mexico.
Eduardo Rivadeneyra-DomínguezFacultad de Química Farmacéutica Biológica, Universidad Veracruzana, Circuito Gonzalo Aguirre Beltrán s/n, Zona Universitaria, 91190, Xalapa, Ver., Mexico.
Juan Francisco Rodríguez-LandaLaboratorio de Neurofarmacología, Instituto de Neuroetología, Universidad Veracruzana, Dr. Luis Castelazo Ayala s/n, col. Industrial Ánimas, 91190, Xalapa, Ver., Mexico.
Tomás GuerreroInstituto de Ciencias Básicas, Universidad Veracruzana, Dr. Luis Castelazo Ayala s/n, col. Industrial Ánimas, 91190, Xalapa, Ver, Mexico. tguerrero@uv.mx.ORCID http://orcid.org/0000-0001-6009-6022
J Sergio Durand-NiconoffInstituto de Ciencias Básicas, Universidad Veracruzana, Dr. Luis Castelazo Ayala s/n, col. Industrial Ánimas, 91190, Xalapa, Ver, Mexico. sdurand@uv.mx.
Universidad Veracruzana · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cyanogenesis is an enzyme-promoted cleavage of β-cyanoglucosides; the release of hydrogen cyanide is believed to produce food poisoning by consumption of certain crops as Cassava (Manihot esculenta Crantz). The production of hydrogen cyanide by some disruption of the plant wall is related to the content of two β-cyanoglucosides (linamarin and lotaustralin) which are stored within the tuber. Some features about the mechanistic bases of these transformations have been published; nevertheless, there are still questions about the exact mechanism, such as the feasibility of a difference in the kinetics of cyanogenesis between both cyanoglucosides. In this work, we have performed a theoretical analysis using DFT and QTAIM theoretical frameworks to propose a feasible mechanism of the observed first step of the enzyme-catalyzed rupture of these glucosides; our results led us to explain the observed difference between linamarin and lotaustralin. Meanwhile, DFT studies suggest that there are no differences between local reactivity indexes of both glucosides; QTAIM topological analysis suggests two important intramolecular interactions which we found to fix the glucoside in such a way that suggests the linamarin as a more reactive system towards a nucleophilic attack, thus explaining the readiness to liberate hydrogen cyanide.

Indexed as

BiocatalysisBiotransformationGlucosidesHydrogen CyanideKineticsManihotMolecular StructureNitrilesPlant TubersQuantum TheoryThermodynamicsGlucosidesHydrogen CyanidelinamarinlotaustralinNitrilesCassavaCyanogenesisDFTLinamaraseLinamarinLotaustralinQTAIMβ-Cyanoglucosides

Identifiers

PMID31478108
OpenAlexW2971356229

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.