ArticleNature genetics2019
A reference genome for pea provides insight into legume genome evolution.
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Article in Nature genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 250 papers, 1 of them a synthesis that pooled it.
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250citing papers in PubMed, 1 pooled it
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Who cites it
250 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Combination of meta-analysis of QTL and GWAS to uncover the genetic architecture of seed yield and seed yield components in common bean.The plant genome · 2023Pooled it
- New components in genetic regulation of age-dependent compound leaf architecture in pea.The New phytologist · 2026Article
- Identification and characterization ofHorticulture research · 2026Article
- T2T and chromosome-level genome assemblies provide insights into the genetic basis of bioactive compound biosynthesis and environmental adaptation in licorice.Science China. Life sciences · 2026Article
- Efficient in-vitro regeneration and transformation for CRISPR/Cas9-mediated genome editing of phytoene desaturase (PDS) gene in pea (Pisum sativum L.).Plant cell reports · 2026Article
- Genetic mapping identifies QTL and candidate genes including Mendel's A gene controlling high levels of partial resistance to Fusarium avenaceum in Pea.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
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- Phylogeny-driven pangenome analysis uncovers the genomic landscape of domesticated and wild Armeniaca species.Horticulture research · 2026Article
- Chromosomal scale genome assembly of medicinal plant Sophora tonkinensis.BMC genomics · 2026Article
- Toward telomere-to-telomere genomics in Fabaceae: Unlocking comparative and functional insights into symbiotic nitrogen fixation.Cell genomics · 2026Review
- Genome-wide association studies of a pea germplasm reveal novel markers and candidate genes implicated in resistance to Fusarium oxysporum f. sp. pisi races 1 and 2.The plant genome · 2026Article
- Inheritance analysis of colour traits and pod type to assess maternal effects in edible-podded peas (Pisum sativum L.).Scientific reports · 2026Article
- A new genome assembly of the pea cultivar 'Caméor' provides resources for functional genomics and genetics.Scientific data · 2026Article
- Unravelling Pea-Ascochyta Blight Interaction and Its Implications for Pea Breeding.International journal of molecular sciences · 2026Review
- Single-cell and spatial transcriptomics in Phragmites australis reveal the association of B chromosomes with plant invasiveness.Genome biology · 2026Article
- Rhizobial Nod factors modulate reactive oxygen species, jasmonates, and pattern-recognizing receptors to suppress immune response.Plant molecular biology · 2026Article
- Integrative nuclear and total proteomics of compound leaves in semi-leafless and leafed pea cultivars reveal regulatory cues in leaf development.BMC plant biology · 2026Article
- Pea transcriptional and phytohormonal responses to adapted and non-adapted aphid biotypes at early stages of infestation.Scientific reports · 2026Article
- Characterization of Genetic Diversity and Genomic Prediction of Secondary Metabolites in Pea Genetic Resources.Plants (Basel, Switzerland) · 2026Article
- Biased retention and functional diversification of CESA superfamily genes in Medicago mediating development and abiotic stress responses.BMC plant biology · 2026Article
190 more citing papers are in PubMed but not listed here.
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Authors and funding
45 authors.
Jonathan Kreplak *Agroécologie, AgroSup Dijon, INRA, Université Bourgogne Franche-Comté Bourgogne, Université Bourgogne Franche-Comté, Dijon, France.ORCID http://orcid.org/0000-0001-5563-1932
Mohammed-Amin Madoui *Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Université Evry, Université Paris-Saclay, Evry, France.ORCID http://orcid.org/0000-0003-4809-2971
Petr CápalInstitute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research, Olomouc, Czech Republic.
Petr NovákBiology Centre, Czech Academy of Sciences, České Budějovice, Czech Republic.ORCID http://orcid.org/0000-0002-5068-9681
Karine LabadieGenoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France.ORCID http://orcid.org/0000-0001-7467-8509
Grégoire AubertAgroécologie, AgroSup Dijon, INRA, Université Bourgogne Franche-Comté Bourgogne, Université Bourgogne Franche-Comté, Dijon, France.
Philipp E BayerSchool of Biological Sciences and Institute of Agriculture, University of Western Australia, Perth, Western Australia, Australia.ORCID http://orcid.org/0000-0001-8530-3067
Krishna K GaliCrop Development Centre/Department of Plant Sciences, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.
Robert A SymeCentre for Crop and Disease Management, Curtin University, Bentley, Western Australia, Australia.ORCID http://orcid.org/0000-0002-8721-2350
Dorrie MainDepartment of Horticulture, Washington State University, Pullman, WA, USA.
Anthony KleinAgroécologie, AgroSup Dijon, INRA, Université Bourgogne Franche-Comté Bourgogne, Université Bourgogne Franche-Comté, Dijon, France.
Aurélie BérardEtude du Polymorphisme des Génomes Végétaux, INRA, Université Paris-Saclay, Evry, France.
Iva VrbováBiology Centre, Czech Academy of Sciences, České Budějovice, Czech Republic.
Cyril FournierAgroécologie, AgroSup Dijon, INRA, Université Bourgogne Franche-Comté Bourgogne, Université Bourgogne Franche-Comté, Dijon, France.ORCID http://orcid.org/0000-0002-3635-9504
Leo d'AgataGenoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France.ORCID http://orcid.org/0000-0002-2264-2931
Caroline BelserGenoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France.ORCID http://orcid.org/0000-0002-8108-9910
Wahiba BerrabahGenoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France.
Helena ToegelováInstitute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research, Olomouc, Czech Republic.ORCID http://orcid.org/0000-0001-6983-0609
Zbyněk MilecInstitute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research, Olomouc, Czech Republic.ORCID http://orcid.org/0000-0003-4724-9519
Jan VránaInstitute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research, Olomouc, Czech Republic.
HueyTyng LeeSchool of Biological Sciences and Institute of Agriculture, University of Western Australia, Perth, Western Australia, Australia.ORCID http://orcid.org/0000-0001-8561-3161
Ayité KougbeadjoAgroécologie, AgroSup Dijon, INRA, Université Bourgogne Franche-Comté Bourgogne, Université Bourgogne Franche-Comté, Dijon, France.ORCID http://orcid.org/0000-0002-7230-6362
Morgane TérézolAgroécologie, AgroSup Dijon, INRA, Université Bourgogne Franche-Comté Bourgogne, Université Bourgogne Franche-Comté, Dijon, France.
Cécile HuneauUMR 1095 Génétique, Diversité, Ecophysiologie des Céréales, INRA, Université Clermont Auvergne, Clermont-Ferrand, France.
Chala J TuroCentre for Crop and Disease Management, School of Molecular and Life Science, Curtin University, Bentley, Western Australia, Australia.ORCID http://orcid.org/0000-0001-7247-5900
Nacer MohellibiURGI, INRA, Université Paris-Saclay, Versailles, France.ORCID http://orcid.org/0000-0003-1398-6043
Pavel NeumannBiology Centre, Czech Academy of Sciences, České Budějovice, Czech Republic.ORCID http://orcid.org/0000-0001-6711-6639
Matthieu FalqueGQE-Le Moulon, INRA, University of Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, France.ORCID http://orcid.org/0000-0002-6444-858X
Karine GallardoAgroécologie, AgroSup Dijon, INRA, Université Bourgogne Franche-Comté Bourgogne, Université Bourgogne Franche-Comté, Dijon, France.
Rebecca McGeeUSDA Agricultural Research Service, Pullman, WA, USA.ORCID http://orcid.org/0000-0002-5613-1283
Bunyamin Tar'anCrop Development Centre/Department of Plant Sciences, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.ORCID http://orcid.org/0000-0003-3583-3910
Abdelhafid BendahmaneInstitute of Plant Sciences Paris-Saclay, INRA, CNRS, University of Paris-Sud, University of Evry, University Paris-Diderot, Sorbonne Paris-Cite, University of Paris-Saclay, Orsay, France.
Jean-Marc AuryGenoscope, Institut François Jacob, CEA, Université Paris-Saclay, Evry, France.ORCID http://orcid.org/0000-0003-1718-3010
Jacqueline BatleySchool of Biological Sciences and Institute of Agriculture, University of Western Australia, Perth, Western Australia, Australia.
Marie-Christine Le PaslierEtude du Polymorphisme des Génomes Végétaux, INRA, Université Paris-Saclay, Evry, France.
Noel EllisSchool of Biological Sciences, University of Auckland, Auckland, New Zealand.ORCID http://orcid.org/0000-0001-6726-9950
Thomas D WarkentinCrop Development Centre/Department of Plant Sciences, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.ORCID http://orcid.org/0000-0003-3059-0606
Clarice J CoyneUSDA Agricultural Research Service, Pullman, WA, USA.ORCID http://orcid.org/0000-0003-1374-4618
Jérome SalseUMR 1095 Génétique, Diversité, Ecophysiologie des Céréales, INRA, Université Clermont Auvergne, Clermont-Ferrand, France.ORCID http://orcid.org/0000-0003-2942-1098
David EdwardsSchool of Biological Sciences and Institute of Agriculture, University of Western Australia, Perth, Western Australia, Australia.ORCID http://orcid.org/0000-0001-7599-6760
Judith LichtenzveigSchool of Agriculture and Environment, University of Western Australia, Perth, Western Australia, Australia.ORCID http://orcid.org/0000-0001-8817-5988
Jiří MacasBiology Centre, Czech Academy of Sciences, České Budějovice, Czech Republic.ORCID http://orcid.org/0000-0003-0829-1570
Jaroslav DoleželInstitute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research, Olomouc, Czech Republic.ORCID http://orcid.org/0000-0002-6263-0492
Patrick WinckerGénomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Université Evry, Université Paris-Saclay, Evry, France.
Judith BurstinAgroécologie, AgroSup Dijon, INRA, Université Bourgogne Franche-Comté Bourgogne, Université Bourgogne Franche-Comté, Dijon, France. judith.burstin@inra.fr.ORCID http://orcid.org/0000-0002-4125-3499
Funding
No grant is acknowledged in the PubMed record.
Abstract
We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.
Indexed as
Evolution, MolecularGenome, PlantQuantitative Trait LociChromosome MappingChromosomes, PlantFabaceaeGene Expression Regulation, PlantGenetic VariationGenomicsPhenotypePhylogenyPisum sativumPlant ProteinsReference StandardsRepetitive Sequences, Nucleic AcidSeed Storage ProteinsPlant ProteinsSeed Storage Proteins
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