Evidence map›Paper›PMID 31477722›Full record

ArticleNature communications2019

Heterogeneity of human bone marrow and blood natural killer cells defined by single-cell transcriptome.

Chao Yang, Jason R Siebert, Robert Burns, Zachary J Gerbec, Benedetta Bonacci, Amy Rymaszewski, Mary Rau, Matthew J Riese, Sridhar Rao, Karen-Sue Carlson and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 202 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
202citing papers in PubMed, 1 pooled it
11.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

202 citing papers in PubMed, 1 synthesis or guideline pooled it, 315 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Trial
  4. Trial
  5. Review
  6. Article
  7. Article
  8. Article
  9. CD56bioRxiv : the preprint server for biology · 2026
    Article
  10. Article
  11. Circulating CD28Journal of translational medicine · 2026
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Immune dysfunction in Alzheimer disease.Nature reviews. Neuroscience · 2026
    Review
  18. Article
  19. Article
  20. Article

142 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Chao YangLaboratory of Molecular Immunology and Immunotherapy, Blood Research Institute, Versiti, Milwaukee, WI, USA.
Jason R SiebertLaboratory of Molecular Immunology and Immunotherapy, Blood Research Institute, Versiti, Milwaukee, WI, USA.
Robert BurnsBioinfomatics Core, Blood Research Institute, Versiti, Milwaukee, WI, USA.
Zachary J GerbecLaboratory of Molecular Immunology and Immunotherapy, Blood Research Institute, Versiti, Milwaukee, WI, USA.
Benedetta BonacciFlow Cytometry Core, Blood Research Institute, Versiti, Milwaukee, WI, USA.
Amy RymaszewskiDepartments of Pediatrics, Medical College of Wisconsin, Milwaukee, WI, USA.ORCID http://orcid.org/0000-0003-1766-595X
Mary RauDepartments of Surgery, Medical College of Wisconsin, Milwaukee, WI, USA.
Matthew J RieseDepartments of Microbiology and Immunology, Medical College of Wisconsin, Milwaukee, WI, USA.
Sridhar RaoDepartments of Pediatrics, Medical College of Wisconsin, Milwaukee, WI, USA.ORCID http://orcid.org/0000-0003-2688-9541
Karen-Sue CarlsonDepartments of Medicine, Medical College of Wisconsin, Milwaukee, WI, USA.
John M RoutesDepartments of Pediatrics, Medical College of Wisconsin, Milwaukee, WI, USA.
James W VerbskyDepartments of Pediatrics, Medical College of Wisconsin, Milwaukee, WI, USA.
Monica S ThakarLaboratory of Molecular Immunology and Immunotherapy, Blood Research Institute, Versiti, Milwaukee, WI, USA.
Subramaniam MalarkannanLaboratory of Molecular Immunology and Immunotherapy, Blood Research Institute, Versiti, Milwaukee, WI, USA. subra.malar@bcw.edu.ORCID http://orcid.org/0000-0002-7511-2731
Medical College of Wisconsin · USVersiti Blood Center of Wisconsin · US

Funding

Medical Scientist Training ProgramT32GM080202 · NIGMS · MEDICAL COLLEGE OF WISCONSIN · PI BARBIERI, JOSEPH T, SALZMAN, NITA H · 2010 to 2024
$5.7M
Cohesin Mutations in Acute Myelogenous LeukemiaR01CA204231 · NCI · VERSITI WISCONSIN, INC. · PI RAO, SRIDHAR · 2017 to 2021
$1.9M
Molecular signature of inflammationR01CA179363 · NCI · MEDICAL COLLEGE OF WISCONSIN · PI MALARKANNAN, SUBRAMANIAM · 2014 to 2018
$1.6M
Molecular mechanisms of signaling co-ordination in innate lymphocytesR01AI102893 · NIAID · MEDICAL COLLEGE OF WISCONSIN · PI MALARKANNAN, SUBRAMANIAM · 2013 to 2016
$1.5M
NCI NIH HHS R01 CA179363NCI NIH HHS R01 CA204231NIAID NIH HHS R01 AI102893NIGMS NIH HHS T32 GM080202
6 · The paper itself

Abstract

Natural killer (NK) cells are critical to both innate and adaptive immunity. However, the development and heterogeneity of human NK cells are yet to be fully defined. Using single-cell RNA-sequencing technology, here we identify distinct NK populations in human bone marrow and blood, including one population expressing higher levels of immediate early genes indicative of a homeostatic activation. Functionally matured NK cells with high expression of CX3CR1, HAVCR2 (TIM-3), and ZEB2 represents terminally differentiated status with the unique transcriptional profile. Transcriptomic and pseudotime analyses identify a transitional population between CD56

Indexed as

Bone MarrowBone Marrow CellsCD56 AntigenCX3C Chemokine Receptor 1Genetic HeterogeneityHepatitis A Virus Cellular Receptor 2HumansKiller Cells, NaturalSingle-Cell AnalysisTranscriptomeZinc Finger E-box Binding Homeobox 2CD56 AntigenCX3C Chemokine Receptor 1CX3CR1 protein, humanHAVCR2 protein, humanHepatitis A Virus Cellular Receptor 2ZEB2 protein, humanZinc Finger E-box Binding Homeobox 2

Identifiers

PMID31477722
PMCPMC6718415
OpenAlexW2970055262

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.