Evidence map›Paper›PMID 31477696›Full record

ArticleNature communications2019

Engineered ribosomes with tethered subunits for expanding biological function.

Erik D Carlson, Anne E d'Aquino, Do Soon Kim, Emily M Fulk, Kim Hoang, Teresa Szal, Alexander S Mankin, Michael C Jewett

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Review
  8. BeyondChemical reviews · 2025
    Review
  9. Review
  10. Autonomous ribosome biogenesis in vitro.Nature communications · 2025
    Article
  11. Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Assembly of the Bacterial Ribosome with Circularly Permuted rRNA.bioRxiv : the preprint server for biology · 2024
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Erik D CarlsonDepartment of Chemical and Biological Engineering, Northwestern University, 2145 Sheridan Road, Tech E-136, Evanston, IL, 60208, USA.
Anne E d'AquinoDepartment of Chemical and Biological Engineering, Northwestern University, 2145 Sheridan Road, Tech E-136, Evanston, IL, 60208, USA.
Do Soon KimDepartment of Chemical and Biological Engineering, Northwestern University, 2145 Sheridan Road, Tech E-136, Evanston, IL, 60208, USA.
Emily M FulkDepartment of Chemical and Biological Engineering, Northwestern University, 2145 Sheridan Road, Tech E-136, Evanston, IL, 60208, USA.
Kim HoangDepartment of Chemical and Biological Engineering, Northwestern University, 2145 Sheridan Road, Tech E-136, Evanston, IL, 60208, USA.
Teresa SzalCenter for Pharmaceutical Biotechnology, University of Illinois at Chicago, Chicago, IL, 60607, USA.
Alexander S MankinCenter for Pharmaceutical Biotechnology, University of Illinois at Chicago, Chicago, IL, 60607, USA.ORCID http://orcid.org/0000-0002-3301-827X
Michael C JewettDepartment of Chemical and Biological Engineering, Northwestern University, 2145 Sheridan Road, Tech E-136, Evanston, IL, 60208, USA. m-jewett@northwestern.edu.ORCID http://orcid.org/0000-0003-2948-6211

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ribo-T is a ribosome with covalently tethered subunits where core 16S and 23S ribosomal RNAs form a single chimeric molecule. Ribo-T makes possible a functionally orthogonal ribosome-mRNA system in cells. Unfortunately, use of Ribo-T has been limited because of low activity of its original version. Here, to overcome this limitation, we use an evolutionary approach to select new tether designs that are capable of supporting faster cell growth and increased protein expression. Further, we evolve new orthogonal Ribo-T/mRNA pairs that function in parallel with, but independent of, natural ribosomes and mRNAs, increasing the efficiency of orthogonal protein expression. The Ribo-T with optimized designs is able to synthesize a diverse set of proteins, and can also incorporate multiple non-canonical amino acids into synthesized polypeptides. The enhanced Ribo-T designs should be useful for exploring poorly understood functions of the ribosome and engineering ribosomes with altered catalytic properties.

Indexed as

Protein BiosynthesisAmino AcidsAmino Acid SequenceBase SequenceEscherichia coliModels, MolecularNucleic Acid ConformationPeptidesRibosomesRNA, MessengerRNA, Ribosomal, 16SRNA, Ribosomal, 23SAmino AcidsPeptidesRNA, MessengerRNA, Ribosomal, 16SRNA, Ribosomal, 23S

Identifiers

PMID31477696
PMCPMC6718428

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.