Evidence map›Paper›PMID 31477563›Full record

ArticleEBioMedicine2019

TCR repertoire and CDR3 motif analyses depict the role of αβ T cells in Ankylosing spondylitis.

Ming Zheng, Xin Zhang, Yinghui Zhou, Juan Tang, Qing Han, Yang Zhang, Qingshan Ni, Gang Chen, Qingzhu Jia, Haili Yu and 7 more

Open access · goldAbstract read
In one paragraph

Article in EBioMedicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 55 citations in OpenAlex.

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  18. Uncovering the Underworld of Axial Spondyloarthritis.International journal of molecular sciences · 2023
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  19. T-Cell Repertoire Analysis in the Conjunctiva of Murine Dry Eye Model.Investigative ophthalmology & visual science · 2023
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 2 countries.

Ming ZhengDepartment of Clinical Immunology, Xijing Hospital, Fourth Military Medical University, Xi'an 710032, China; National Translational Science Center for Molecular Medicine & Department of Cell Biology, The Fourth Military Medical University, Xi'an 710032, China; Institute of Military Cognition and Brain Sciences, Academy of Military Medical Sciences, 27 Taiping Road, Beijing 100850, China.
Xin ZhangDepartment of Clinical Immunology, Xijing Hospital, Fourth Military Medical University, Xi'an 710032, China.
Yinghui ZhouDepartment of Clinical Immunology, Xijing Hospital, Fourth Military Medical University, Xi'an 710032, China; National Translational Science Center for Molecular Medicine & Department of Cell Biology, The Fourth Military Medical University, Xi'an 710032, China.
Juan TangNational Translational Science Center for Molecular Medicine & Department of Cell Biology, The Fourth Military Medical University, Xi'an 710032, China.
Qing HanDepartment of Clinical Immunology, Xijing Hospital, Fourth Military Medical University, Xi'an 710032, China.
Yang ZhangNational Translational Science Center for Molecular Medicine & Department of Cell Biology, The Fourth Military Medical University, Xi'an 710032, China.
Qingshan NiBiomedical Analysis Center, Third Military Medical University, Chongqing 400038, China.
Gang ChenBiomedical Analysis Center, Third Military Medical University, Chongqing 400038, China.
Qingzhu JiaBiomedical Analysis Center, Third Military Medical University, Chongqing 400038, China.
Haili YuBiomedical Analysis Center, Third Military Medical University, Chongqing 400038, China.
Siqi LiuDepartment of Immunology, Duke University Medical Center, Durham, NC 27710, USA.
Elizabeth RobinsDepartment of Immunology, Duke University Medical Center, Durham, NC 27710, USA.
Ning Jenny JiangDepartment of Biomedical Engineering, University of Texas at Austin, Austin, TX 78712, USA.
Ying WanBiomedical Analysis Center, Third Military Medical University, Chongqing 400038, China. Electronic address: wanying.cn@gmail.com.
Qi-Jing LiDepartment of Immunology, Duke University Medical Center, Durham, NC 27710, USA. Electronic address: qi-jing.li@duke.edu.
Zhi-Nan ChenNational Translational Science Center for Molecular Medicine & Department of Cell Biology, The Fourth Military Medical University, Xi'an 710032, China. Electronic address: znchen@fmmu.edu.cn.
Ping ZhuDepartment of Clinical Immunology, Xijing Hospital, Fourth Military Medical University, Xi'an 710032, China; National Translational Science Center for Molecular Medicine & Department of Cell Biology, The Fourth Military Medical University, Xi'an 710032, China. Electronic address: zhuping@fmmu.edu.cn.
Army Medical University · CNXijing Hospital · CNAir Force Medical University · CNDuke Medical Center · USAcademy of Military Medical Sciences · CNDuke University · USThe University of Texas at Austin · US

Funding

Basic Immunology Training ProgramT32AI052077 · NIAID · DUKE UNIVERSITY · PI KRANGEL, MICHAEL S · 2002 to 2024
$4.2M
NIAID NIH HHS T32 AI052077
6 · The paper itself

Abstract

backgroundAnkylosing spondylitis (AS) is a chronic inflammatory disease with worldwide high prevalence. Although AS is strongly associated with HLA-B27 MHC-I antigen presentation, the role played by αβ T cells in AS remains elusive.

methodsUtilizing TCRβ repertoire sequencing and bioinformatics tools developed in house, we analyzed overall TCR repertoire structures and antigen-recognizing CDR3 motifs in AS patients with different disease activities.

findingsWe found that disease progression is associated with both CD4+ and CD8+ T cell oligo-clonal expansion, which suggests that αβ T cell activation may mediate AS disease progression. By developing a bioinformatics platform to dissect antigen-specific responses, we discovered a cell population consisting of both CD4+ and CD8+ T cells expressing identical TCRs, herein termed CD4/8 T cells. CD4/8 clonotypes were highly enriched in the spondyloarthritic joint fluid of patients, and their expansion correlated with the activity of disease.

interpretationThese results provide evidence on the T cell clone side to reveal the potential role of CD4/8 T cells in the etiology of AS development.

Indexed as

AdolescentAdultAmino Acid MotifsAmino Acid SequenceAutoimmune DiseasesBiomarkersCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesComplementarity Determining RegionsDisease SusceptibilityHumansImmunohistochemistryReceptors, Antigen, T-CellSpondylitis, AnkylosingT-Lymphocyte SubsetsYoung AdultBiomarkersComplementarity Determining RegionsReceptors, Antigen, T-CellAnkylosing spondylitisAutoimmune diseaseComplementarity determining region 3HumanT cellsTCR repertoire

Identifiers

PMID31477563
PMCPMC6796593
OpenAlexW2970093619

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.