Evidence map›Paper›PMID 31477173›Full record

ArticleGenome biology2019

Comparative genomic analysis of six Glossina genomes, vectors of African trypanosomes.

Geoffrey M Attardo, Adly M M Abd-Alla, Alvaro Acosta-Serrano, James E Allen, Rosemary Bateta, Joshua B Benoit, Kostas Bourtzis, Jelle Caers, Guy Caljon, Mikkel B Christensen and 44 more

Abstract readComparative Study
In one paragraph

Article in Genome biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

54 citing papers in PubMed.

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  12. The Genome of the American Dog Tick (bioRxiv : the preprint server for biology · 2025
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  14. mir-31 mediated control of bacteriome size in tsetse flies.Current research in insect science · 2025
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  16. bioRxiv : the preprint server for biology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

54 authors.

Geoffrey M AttardoDepartment of Entomology and Nematology, University of California, Davis, Davis, CA, USA. gmattardo@ucdavis.edu.
Adly M M Abd-AllaInsect Pest Control Laboratory, Joint FAO/IAEA Division of Nuclear Techniques in Food & Agriculture, Vienna, Vienna, Austria.
Alvaro Acosta-SerranoDepartment of Vector Biology, Liverpool School of Tropical Medicine, Merseyside, Liverpool, UK.
James E AllenVectorBase, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge, Cambridgeshire, UK.
Rosemary BatetaDepartment of Biochemistry, Biotechnology Research Institute - Kenya Agricultural and Livestock Research Organization, Kikuyu, Kenya.
Joshua B BenoitDepartment of Biological Sciences, University of Cincinnati, Cincinnati, OH, USA.
Kostas BourtzisInsect Pest Control Laboratory, Joint FAO/IAEA Division of Nuclear Techniques in Food & Agriculture, Vienna, Vienna, Austria.
Jelle CaersDepartment of Biology - Functional Genomics and Proteomics Group, KU Leuven, Leuven, Belgium.
Guy CaljonLaboratory of Microbiology, Parasitology and Hygiene, University of Antwerp, Antwerp, Belgium.
Mikkel B ChristensenVectorBase, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge, Cambridgeshire, UK.
David W FarrowDepartment of Biological Sciences, University of Cincinnati, Cincinnati, OH, USA.
Markus FriedrichDepartment of Biological Sciences, Wayne State University, Detroit, MI, USA.
Aurélie Hua-VanLaboratoire Evolution, Genomes, Comportement, Ecologie, CNRS, IRD, Univ. Paris-Sud, Université Paris-Saclay, Gif-sur-Yvette, France.
Emily C JenningsDepartment of Biological Sciences, University of Cincinnati, Cincinnati, OH, USA.
Denis M LarkinDepartment of Comparative Biomedical Sciences, Royal Veterinary College, London, UK.
Daniel LawsonDepartment of Life Sciences, Imperial College London, London, UK.
Michael J LehaneDepartment of Vector Biology, Liverpool School of Tropical Medicine, Merseyside, Liverpool, UK.
Vasileios P LenisSchools of Medicine and Dentistry, University of Plymouth, Plymouth, UK.
Ernesto Lowy-GallegoVectorBase, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge, Cambridgeshire, UK.
Rosaline W MachariaMolecular Biology and Bioinformatics Unit, International Center for Insect Physiology and Ecology, Nairobi, Kenya.
Anna R MalacridaDepartment of Biology and Biotechnology, University of Pavia, Pavia, Italy.
Heather G MarcoDepartment of Biological Sciences, University of Cape Town, Rondebosch, South Africa.
Daniel MasigaMolecular Biology and Bioinformatics Unit, International Center for Insect Physiology and Ecology, Nairobi, Kenya.
Gareth L MaslenVectorBase, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge, Cambridgeshire, UK.
Irina MatetoviciBiomedical Sciences, Institute of Tropical Medicine, Antwerp, Belgium.
Richard P MeiselDepartment of Biology and Biochemistry, University of Houston, Houston, TX, USA.
Irene MekiInsect Pest Control Laboratory, Joint FAO/IAEA Division of Nuclear Techniques in Food & Agriculture, Vienna, Vienna, Austria.
Veronika MichalkovaDepartment of Biological Sciences, Florida International University, Miami, Florida, USA.
Wolfgang J MillerDepartment of Cell and Developmental Biology, Medical University of Vienna, Vienna, Austria.
Patrick MinxMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA.
Paul O MirejiDepartment of Biochemistry, Biotechnology Research Institute - Kenya Agricultural and Livestock Research Organization, Kikuyu, Kenya.
Lino OmettoDepartment of Sustainable Ecosystems and Bioresources, Research and Innovation Centre, Fondazione Edmund Mach, San Michele all'Adige, TN, Italy.
Andrew G ParkerInsect Pest Control Laboratory, Joint FAO/IAEA Division of Nuclear Techniques in Food & Agriculture, Vienna, Vienna, Austria.
Rita RioDepartment of Biology, West Virginia University, Morgantown, WV, USA.
Clair RoseDepartment of Vector Biology, Liverpool School of Tropical Medicine, Merseyside, Liverpool, UK.
Andrew J RosendaleDepartment of Biology, Mount St. Joseph University, Cincinnati, OH, USA.
Omar Rota-StabelliDepartment of Sustainable Ecosystems and Bioresources, Research and Innovation Centre, Fondazione Edmund Mach, San Michele all'Adige, TN, Italy.
Grazia SaviniDepartment of Biology and Biotechnology, University of Pavia, Pavia, Italy.
Liliane SchoofsDepartment of Biology - Functional Genomics and Proteomics Group, KU Leuven, Leuven, Belgium.
Francesca ScolariDepartment of Biology and Biotechnology, University of Pavia, Pavia, Italy.
Martin T SwainInstitute of Biological, Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, Ceredigion, UK.
Peter TakáčDepartment of Animal Systematics, Ústav zoológie SAV; Scientica, Ltd, Bratislava, Slovakia.
Chad TomlinsonMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA.
George TsiamisDepartment of Environmental and Natural Resources Management, University of Patras, Agrinio, Etoloakarnania, Greece.
Jan Van Den AbbeeleBiomedical Sciences, Institute of Tropical Medicine, Antwerp, Belgium.
Aurelien VigneronDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.
Jingwen WangSchool of Life Sciences, Fudan University, Shanghai, China.
Wesley C WarrenMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA.
Robert M WaterhouseDepartment of Ecology & Evolution, Swiss Institute of Bioinformatics, University of Lausanne, Lausanne, Switzerland.
Matthew T WeirauchCenter for Autoimmune Genomics and Etiology and Divisions of Biomedical Informatics and Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Brian L WeissDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.
Richard K WilsonMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA.
Xin ZhaoCAS Center for Influenza Research and Early-warning (CASCIRE), Chinese Academy of Sciences, Beijing, China.
Serap AksoyDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA. serap.aksoy@yale.edu.ORCID 0000-0001-9941-143X

Funding

Large Scale Genome SequencingU54HG003079 · NHGRI · WASHINGTON UNIVERSITY · PI DUTCHER, SUSAN K · 2004 to 2016
$445.7M
Evolutionary Genetics of Tsetse and Its SymbiontsR01AI068932 · NIAID · YALE UNIVERSITY · PI AKSOY, SERAP, CACCONE, ADALGISA · 2008 to 2018
$7.0M
Molecular Aspects of Tsetse and Trypanosome TransmissionR01AI051584 · NIAID · YALE UNIVERSITY · PI AKSOY, SERAP · 2003 to 2013
$4.3M
Control of Tsetse Fly Transmitted Diseases in KenyaU01AI115648 · NIAID · YALE UNIVERSITY · PI AKSOY, SERAP · 2015 to 2019
$3.6M
Tsetse Transmitted African TrypanosomiasisD43TW007391 · FIC · YALE UNIVERSITY · PI AKSOY, SERAP · 2008 to 2017
$1.8M
Expanding the toolbox for tsetse reproductive biologyR21AI109263 · NIAID · YALE UNIVERSITY · PI AKSOY, SERAP, ATTARDO, GEOFFREY M · 2014 to 2015
$428k
Evidence based control strategies of Sleeping Sickness vectorsR03TW008413 · FIC · YALE UNIVERSITY · PI AKSOY, SERAP · 2010 to 2012
$175k
Molecular and functional characterization of olfaction genes in tsetse fliesR03TW009444 · FIC · YALE UNIVERSITY · PI AKSOY, SERAP · 2013 to 2015
$157k
FIC NIH HHS D43 TW007391FIC NIH HHS R03 TW008413FIC NIH HHS R03 TW009444National Institute of Allergy and Infectious Diseases R21AI109263NHGRI NIH HHS U54 HG003079NHGRI NIH HHS U54HG003079NIAID NIH HHS R01 AI051584NIAID NIH HHS R01 AI068932NIAID NIH HHS R21 AI109263NIAID NIH HHS U01 AI115648NIH HHS R01AI051584NIH HHS R03TW008413NIH HHS R03TW009444NIH HHS U01AI115648
6 · The paper itself

Abstract

backgroundTsetse flies (Glossina sp.) are the vectors of human and animal trypanosomiasis throughout sub-Saharan Africa. Tsetse flies are distinguished from other Diptera by unique adaptations, including lactation and the birthing of live young (obligate viviparity), a vertebrate blood-specific diet by both sexes, and obligate bacterial symbiosis. This work describes the comparative analysis of six Glossina genomes representing three sub-genera: Morsitans (G. morsitans morsitans, G. pallidipes, G. austeni), Palpalis (G. palpalis, G. fuscipes), and Fusca (G. brevipalpis) which represent different habitats, host preferences, and vectorial capacity.

resultsGenomic analyses validate established evolutionary relationships and sub-genera. Syntenic analysis of Glossina relative to Drosophila melanogaster shows reduced structural conservation across the sex-linked X chromosome. Sex-linked scaffolds show increased rates of female-specific gene expression and lower evolutionary rates relative to autosome associated genes. Tsetse-specific genes are enriched in protease, odorant-binding, and helicase activities. Lactation-associated genes are conserved across all Glossina species while male seminal proteins are rapidly evolving. Olfactory and gustatory genes are reduced across the genus relative to other insects. Vision-associated Rhodopsin genes show conservation of motion detection/tracking functions and variance in the Rhodopsin detecting colors in the blue wavelength ranges.

conclusionsExpanded genomic discoveries reveal the genetics underlying Glossina biology and provide a rich body of knowledge for basic science and disease control. They also provide insight into the evolutionary biology underlying novel adaptations and are relevant to applied aspects of vector control such as trap design and discovery of novel pest and disease control strategies.

Indexed as

Genome, InsectGenomicsAnimalsDNA Transposable ElementsDrosophila melanogasterFemaleGene Expression RegulationGenes, InsectGenes, X-LinkedGeographyInsect ProteinsInsect VectorsMaleMutagenesis, InsertionalPhylogenyRepetitive Sequences, Nucleic AcidDNA Transposable ElementsInsect ProteinsDiseaseHematophagyLactationNeglectedSymbiosisTrypanosomiasisTsetse

Identifiers

PMID31477173
PMCPMC6721284

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