Evidence map›Paper›PMID 31475743›Full record

ArticleAnimal genetics2019

Two linked TBXT (brachyury) gene polymorphisms are associated with the tailless phenotype in fat-rumped sheep.

J Han, M Yang, T Guo, C Niu, J Liu, Y Yue, C Yuan, B Yang

Open access · hybridAbstract read
In one paragraph

Article in Animal genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 39 citations in OpenAlex.

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  13. Phenotype transition from wild mouflon to domestic sheep.Genetics, selection, evolution : GSE · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 4 countries.

J HanLanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou, 730050, China.
M YangCollege of Animal Science and Technology, Shihezi University, Shihezi, 832000, China.
T GuoLanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou, 730050, China.
C NiuLanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou, 730050, China.
J LiuLanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou, 730050, China.
Y YueLanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou, 730050, China.
C YuanLanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou, 730050, China.
B YangLanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou, 730050, China.ORCID https://orcid.org/0000-0001-7516-8914
Lanzhou Institute of Husbandry and Pharmaceutical Sciences · CNShihezi University · CN

Funding

Agricultural Science and Technology Innovation Program for Genetic Resource and Breeding of Fine-Wool Sheep, Chinese Academy of Agricultural Sciences(CARS-39-02)Modern China Wool and Cashmere Technology Research System CARS-39-02National Natural Science Foundation for Young Scholars of China 31702092National Natural Science Foundation for Young Scholars of China 31802045Special Funds for Basic Research of Young Scholars in Shihezi Universities(CXRC201808;RCSX2018B10)
6 · The paper itself

Abstract

T-box transcription factor T (TBXT), encoding the brachyury protein, is an embryonic nuclear transcription factor involved in mesoderm formation and differentiation. Previous studies indicate that TBXT mutations are responsible for the tailless or short-tailed phenotype of many vertebrates. To verify whether the tailless phenotype in fat-rumped sheep is associated with TBXT mutations, exon 2 of the TBXT gene for 301 individuals belonging to 13 Chinese and Iranian sheep breeds was directly sequenced. Meanwhile, 380 samples were used to detect the genotypes of the candidate variations by mapping to their reads databases in the Sequence Read Archive repository of GenBank. The results showed that one missense mutation, c.334G>T (GGG>TGG) with a completely linked synonymous variant c.333G>C (CCG>CCC) was found to be associated with the 'tailless' characteristic in typical fat-rumped sheep breeds. The c.334G>T transversion led to the conversion of glycine to tryptophan at the 112th amino acid in the T-box domain of the brachyury protein. In addition, crossbreeding experiments for long-tailed and tailless sheep showed that CT/CT allele of nucleotides (nt) 333 and 334, a recessive mutation, would cause sheep tails to be shorter, suggesting that these two linked variants at nucleotides 333 and 334 in TBXT are probably causative mutations responsible for the tailless phenotype in sheep.

Indexed as

AnimalsBrachyury ProteinChinaFemaleFetal ProteinsIranMaleMutation, MissensePhenotypeSheep, DomesticSpineTailT-Box Domain ProteinsBrachyury ProteinFetal ProteinsT-Box Domain Proteinscaudal vertebraecausative mutationsKazakh sheeptail typeT-box gene

Identifiers

PMID31475743
PMCPMC6899607
OpenAlexW2971417404

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.