Evidence map›Paper›PMID 31474649›Full record

ArticleCell structure and function2019

Identification of 15 New Bypassable Essential Genes of Fission Yeast.

Aoi Takeda, Shigeaki Saitoh, Hiroyuki Ohkura, Kenneth E Sawin, Gohta Goshima

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Cell structure and function, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 12 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Mitotic spindle formation in the absence of Polo kinase.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  5. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Aoi TakedaDivision of Biological Science, Graduate School of Science, Nagoya University.
Shigeaki SaitohDivision of Cell Biology, Institute of Life Science, Kurume University.
Hiroyuki OhkuraWellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh.
Kenneth E SawinWellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh.
Gohta GoshimaDivision of Biological Science, Graduate School of Science, Nagoya University.
Nagoya University · JPUniversity of Edinburgh · GBKurume University · JP

Funding

Wellcome Trust 094517Wellcome Trust 098030Wellcome Trust 203149Wellcome Trust 206315Wellcome Trust 206315/Z/17/ZWellcome Trust 210659Wellcome Trust 210659/Z/18/Z
6 · The paper itself

Abstract

Every organism has a different set of genes essential for its viability. This indicates that an organism can become tolerant to the loss of an essential gene under certain circumstances during evolution, via the manifestation of 'masked' alternative mechanisms. In our quest to systematically uncover masked mechanisms in eukaryotic cells, we developed an extragenic suppressor screening method using haploid spores deleted of an essential gene in the fission yeast Schizosaccharomyces pombe. We screened for the 'bypass' suppressors of lethality of 92 randomly selected genes that are essential for viability in standard laboratory culture conditions. Remarkably, extragenic mutations bypassed the essentiality of as many as 20 genes (22%), 15 of which have not been previously reported. Half of the bypass-suppressible genes were involved in mitochondria function; we also identified multiple genes regulating RNA processing. 18 suppressible genes were conserved in the budding yeast Saccharomyces cerevisiae, but 13 of them were non-essential in that species. These trends suggest that essentiality bypass is not a rare event and that each organism may be endowed with secondary or backup mechanisms that can substitute for primary mechanisms in various biological processes. Furthermore, the robustness of our simple spore-based methodology paves the way for genome-scale screening.Key words: Schizosaccharomyces pombe, extragenic suppressor screening, bypass of essentiality (BOE), cut7 (kinesin-5), hul5 (E3 ubiquitin ligase).

Indexed as

Genes, EssentialGenes, FungalMutationSchizosaccharomycesbypass of essentiality (BOE)cut7 (kinesin-5)extragenic suppressor screeninghul5 (E3 ubiquitin ligase)Schizosaccharomyces pombe

Identifiers

PMID31474649
PMCPMC6877344
OpenAlexW2970140473

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.