Evidence map›Paper›PMID 31474318›Full record

ArticleAmerican journal of human genetics2019

Redefining the Etiologic Landscape of Cerebellar Malformations.

Kimberly A Aldinger, Andrew E Timms, Zachary Thomson, Ghayda M Mirzaa, James T Bennett, Alexander B Rosenberg, Charles M Roco, Matthew Hirano, Fatima Abidi, Parthiv Haldipur and 36 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
20.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 95 citations in OpenAlex.

  1. Article
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  7. Spatiotemporal histogenesis of the developing human cerebellum reveals dynamic layering of Bergmann glia.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  8. Expandingthe Phenotypic Spectrum ofMolecular syndromology · 2026
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  9. Article
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  11. A clinical and genotype-phenotype analysis of MACF1 variants.American journal of human genetics · 2025
    Article
  12. Identification ofJournal of medical genetics · 2025
    Article
  13. Mapping the developmental profile of ventricular zone-derived neurons in the human cerebellum.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  14. Review
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1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

46 authors at 18 institutions in 5 countries.

Kimberly A AldingerCenter for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA 98101, USA.
Andrew E TimmsCenter for Developmental Biology and Regenerative Medicine, Seattle Children's Research Institute, Seattle, WA 98101, USA.
Zachary ThomsonCenter for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA 98101, USA.
Ghayda M MirzaaCenter for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA 98101, USA; Department of Pediatrics, University of Washington, Seattle, WA 98105, USA.
James T BennettCenter for Developmental Biology and Regenerative Medicine, Seattle Children's Research Institute, Seattle, WA 98101, USA; Department of Pediatrics, University of Washington, Seattle, WA 98105, USA.
Alexander B RosenbergDepartment of Electrical Engineering, University of Washington, Seattle, WA 98105, USA.
Charles M RocoDepartment of Bioengineering, University of Washington, Seattle, WA 98105, USA.
Matthew HiranoDepartment of Electrical Engineering, University of Washington, Seattle, WA 98105, USA.
Fatima AbidiGreenwood Genetic Center, Greenwood, SC 29646, USA.
Parthiv HaldipurCenter for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA 98101, USA.
Chi V ChengCenter for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA 98101, USA.
Sarah CollinsCenter for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA 98101, USA.
Kaylee ParkCenter for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA 98101, USA.
Jordan ZeigerCenter for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA 98101, USA.
Lynne M OvermannInstitute of Genetic Medicine, Newcastle University, International Centre for life, Central Parkway, Newcastle upon Tyne NE1 3BZ, UK.
Fowzan S AlkurayaDepartment of Genetics, King Faisal Specialist Hospital Research Center, Riyadh, 11211, Saudi Arabia.
Leslie G BieseckerMedical Genomics and Metabolic Genetics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, 20892 USA.
Stephen R BraddockDepartment of Pediatrics, Saint Louis University School of Medicine, St. Louis, MO 63104, USA.
Sara CatheyGreenwood Genetic Center, Greenwood, SC 29646, USA.
Megan T ChoGeneDx, Gaithersburg, MD 20877, USA.
Brian H Y ChungDepartment of Pediatrics and Adolescent Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, China.
David B EvermanGreenwood Genetic Center, Greenwood, SC 29646, USA.
Yuri A ZarateSection of Genetics and Metabolism, University of Arkansas for Medical Sciences, Little Rock, AR, 72202, USA.
Julie R JonesGreenwood Genetic Center, Greenwood, SC 29646, USA.
Charles E SchwartzGreenwood Genetic Center, Greenwood, SC 29646, USA.
Amy GoldsteinMitochondrial Medicine Frontier Program, Division of Human Genetics, Department of Pediatrics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA; The Department of Pediatrics, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, 19104, USA.
Robert J HopkinDivision of Human Genetics, Department of Pediatrics, Cincinnati Children's Hospital Medical Center and University of Cincinnati College of Medicine, Cincinnati, OH 45229, USA.
Ian D KrantzThe Department of Pediatrics, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, 19104, USA; Division of Human Genetics and Molecular Biology, The Children's Hospital of Philadelphia, Philadelphia, PA, 19104 USA.
Roger L LaddaDepartment of Pediatrics, Milton S Hershey Medical Center, Hershey, PA 17033, USA; Departments of Pathology, Milton S Hershey Medical Center, Hershey, PA 17033, USA.
Kathleen A LeppigGenetic Services, Kaiser Permanente Washington, Seattle, WA 98112, USA.
Barbara C McGillivrayDepartment of Medical Genetics, Children's and Women's Health Centre of British Columbia, Vancouver, BC V6H 3N1, Canada.
Susan SellDepartment of Pediatrics, Milton S Hershey Medical Center, Hershey, PA 17033, USA.
Katherine WusikDivision of Human Genetics, Department of Pediatrics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH 45229, USA.
Joseph G GleesonDepartment of Neurosciences, Howard Hughes Medical Institute, University of California, San Diego, La Jolla, CA 92093, USA.
Deborah A NickersonDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA; University of Washington Center for Mendelian Genomics, Seattle, WA 98195, USA.
Michael J BamshadDepartment of Pediatrics, University of Washington, Seattle, WA 98105, USA; Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA; University of Washington Center for Mendelian Genomics, Seattle, WA 98195, USA.
Dianne GerrelliUniversity College London Institute of Child Health, London WC1N 1EH, UK.
Steven N LisgoInstitute of Genetic Medicine, Newcastle University, International Centre for life, Central Parkway, Newcastle upon Tyne NE1 3BZ, UK.
Georg SeeligDepartment of Electrical Engineering, University of Washington, Seattle, WA 98105, USA; Paul G. Allen School of Computer Science & Engineering, University of Washington, Seattle, WA 98195, USA.
Gisele E IshakCenter for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA 98101, USA; Department of Radiology, University of Washington, Seattle, WA 98195, USA.
A James BarkovichDepartments of Radiology, Neurology, Pediatrics, and Neurosurgery, University of California, San Francisco, San Francisco, CA 94143, USA.
Cynthia J CurryGenetic Medicine, Department of Pediatrics, University of California San Francisco, Fresno, CA, 93701, USA.
Ian A GlassCenter for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA 98101, USA; Department of Pediatrics, University of Washington, Seattle, WA 98105, USA.
Kathleen J MillenCenter for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA 98101, USA; Department of Pediatrics, University of Washington, Seattle, WA 98105, USA.
Dan DohertyCenter for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA 98101, USA; Department of Pediatrics, University of Washington, Seattle, WA 98105, USA.
William B DobynsCenter for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA 98101, USA; Department of Pediatrics, University of Washington, Seattle, WA 98105, USA; Department of Neurology, University of Washington, Seattle, WA 98105, USA. Electronic address: wbd@uw.edu.
University of Washington · USCenter for Infectious Disease Research · USGreenwood Genetic Center · USCentre for Life · GBChildren's Hospital of Philadelphia · USCincinnati Children's Hospital Medical Center · USPenn State Milton S. Hershey Medical Center · USSeattle Children's Hospital · USUniversity of California, San Francisco · USChildren's & Women's Health Centre of British Columbia · CAHoward Hughes Medical Institute · USKaiser Permanente · USKing Faisal Specialist Hospital & Research Centre · SANational Institutes of Health · USSaint Louis University · USUniversity College London · GBUniversity of Arkansas for Medical Sciences · USUniversity of Hong Kong · HK

Funding

Rare & Mosaic Disorders Molecular ResearchZIAHG200328 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BIESECKER, LESLIE · 2009 to 2025
$26.8M
UW Center for Mendelian GenomicsU54HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, NICKERSON, DEBORAH A · 2012 to 2015
$20.0M
Genomic Ascertainment - Molecular and Genetic AspectsZIAHG200359 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BIESECKER, LESLIE · 2009 to 2025
$19.7M
LABORATORY OF DEVELOPMENTAL BIOLOGYR24HD000836 · NICHD · UNIVERSITY OF WASHINGTON · PI Ian Amos Glass · 1995 to 2026
$16.9M
UW Center for Mendelian GenomicsUM1HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, LEAL, SUZANNE M · 2016 to 2020
$15.3M
The Genetic Basis of Mid-Hindbrain MalformationsR01NS050375 · NINDS · UNIVERSITY OF MINNESOTA · PI DOBYNS, WILLIAM B. · 2005 to 2019
$9.9M
Intellectual and Developmental Disabilities Research CenterU54HD083091 · NICHD · UNIVERSITY OF WASHINGTON · PI DOHERTY, DANIEL · 2014 to 2019
$7.9M
Clinical and Molecular Studies of MalformationsZ01HG200328 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BIESECKER, LESLIE G · 2005 to 2008
$5.5M
Pathological Mechanisms of Human Cerebeller MalformationsR01NS095733 · NINDS · SEATTLE CHILDREN'S HOSPITAL · PI MILLEN, KATHLEEN JOYCE · 2016 to 2020
$3.0M
Genes and pathways underlying brain overgrowth and focal cortical malformationsK08NS092898 · NINDS · SEATTLE CHILDREN'S HOSPITAL · PI MIRZAA, GHAYDA · 2015 to 2019
$930k
Intramural NIH HHS Z01 HG200328Medical Research Council MR/R006237/1NHGRI NIH HHS U54 HG006493NHGRI NIH HHS UM1 HG006493NICHD NIH HHS R24 HD000836NICHD NIH HHS U54 HD083091NINDS NIH HHS K08 NS092898NINDS NIH HHS R01 NS050375NINDS NIH HHS R01 NS095733Wellcome Trust
6 · The paper itself

Abstract

Cerebellar malformations are diverse congenital anomalies frequently associated with developmental disability. Although genetic and prenatal non-genetic causes have been described, no systematic analysis has been performed. Here, we present a large-exome sequencing study of Dandy-Walker malformation (DWM) and cerebellar hypoplasia (CBLH). We performed exome sequencing in 282 individuals from 100 families with DWM or CBLH, and we established a molecular diagnosis in 36 of 100 families, with a significantly higher yield for CBLH (51%) than for DWM (16%). The 41 variants impact 27 neurodevelopmental-disorder-associated genes, thus demonstrating that CBLH and DWM are often features of monogenic neurodevelopmental disorders. Though only seven monogenic causes (19%) were identified in more than one individual, neuroimaging review of 131 additional individuals confirmed cerebellar abnormalities in 23 of 27 genetic disorders (85%). Prenatal risk factors were frequently found among individuals without a genetic diagnosis (30 of 64 individuals [47%]). Single-cell RNA sequencing of prenatal human cerebellar tissue revealed gene enrichment in neuronal and vascular cell types; this suggests that defective vasculogenesis may disrupt cerebellar development. Further, de novo gain-of-function variants in PDGFRB, a tyrosine kinase receptor essential for vascular progenitor signaling, were associated with CBLH, and this discovery links genetic and non-genetic etiologies. Our results suggest that genetic defects impact specific cerebellar cell types and implicate abnormal vascular development as a mechanism for cerebellar malformations. We also confirmed a major contribution for non-genetic prenatal factors in individuals with cerebellar abnormalities, substantially influencing diagnostic evaluation and counseling regarding recurrence risk and prognosis.

Indexed as

CerebellumCohort StudiesFemaleHumansMalePregnancyautismcerebellar hypoplasiacerebellumDandy-Walker malformationepilepsyexomegenesheterotopiaintellectual disabilitytwins

Identifiers

PMID31474318
PMCPMC6731369
OpenAlexW2971203796

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.