Evidence map›Paper›PMID 31471321›Full record

ArticleThe Journal of biological chemistry2019

Insights into an unusual Auxiliary Activity 9 family member lacking the histidine brace motif of lytic polysaccharide monooxygenases.

Kristian E H Frandsen, Morten Tovborg, Christian I Jørgensen, Nikolaj Spodsberg, Marie-Noëlle Rosso, Glyn R Hemsworth, Elspeth F Garman, Geoffrey W Grime, Jens-Christian N Poulsen, Tanveer S Batth and 8 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Orchestrating copper binding: structure and variations on the cupredoxin fold.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2022
    Review
  6. Review
  7. Article
  8. LPMOInternational journal of molecular sciences · 2020
    Article
  9. Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 10 institutions in 5 countries.

Kristian E H FrandsenDepartment of Chemistry, University of Copenhagen, 2100 Copenhagen, Denmark.ORCID 0000-0002-7136-9820
Morten TovborgNovozymes A/S, 2880 Bagsvaerd, Denmark.
Christian I JørgensenNovozymes A/S, 2880 Bagsvaerd, Denmark.
Nikolaj SpodsbergNovozymes A/S, 2880 Bagsvaerd, Denmark.
Marie-Noëlle RossoINRA, Aix-Marseille Université, UMR1163 BBF (Biodiversité et Biotechnologie Fongiques), 13009 Marseille, France.
Glyn R HemsworthSchool of Molecular and Cellular Biology and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, United Kingdom.
Elspeth F GarmanDepartment of Biochemistry, University of Oxford, Oxford OX1 3QU, United Kingdom.ORCID 0000-0001-8329-5665
Geoffrey W GrimeThe Ion Beam Centre, Advanced Technology Institute, University of Surrey, Guildford GU2 7XH, United Kingdom.ORCID 0000-0002-4957-8175
Jens-Christian N PoulsenDepartment of Chemistry, University of Copenhagen, 2100 Copenhagen, Denmark.ORCID 0000-0002-3553-0015
Tanveer S BatthThe Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, 2200 Copenhagen, Denmark.
Shingo MiyauchiINRA, Aix-Marseille Université, UMR1163 BBF (Biodiversité et Biotechnologie Fongiques), 13009 Marseille, France.ORCID 0000-0002-0620-5547
Anna LipzenUnited States Department of Energy Joint Genome Institute, Walnut Creek, California 94598.
Chris DaumUnited States Department of Energy Joint Genome Institute, Walnut Creek, California 94598.
Igor V GrigorievUnited States Department of Energy Joint Genome Institute, Walnut Creek, California 94598.
Katja S JohansenDepartment of Geosciences and Natural Resource Management, University of Copenhagen, 1958 Frederiksberg C, Denmark.
Bernard HenrissatArchitecture et Fonction des Macromolécules Biologiques (AFMB), CNRS, Aix-Marseille Université, 13009 Marseille, France.
Jean-Guy BerrinINRA, Aix-Marseille Université, UMR1163 BBF (Biodiversité et Biotechnologie Fongiques), 13009 Marseille, France.
Leila Lo LeggioDepartment of Chemistry, University of Copenhagen, 2100 Copenhagen, Denmark leila@chem.ku.dk.ORCID 0000-0002-5135-0882
University of Copenhagen · DKAix-Marseille Université · FRNovozymes (Denmark) · DKJoint Genome Institute · USBiodiversité et Biotechnologie Fongiques · FRInstitute of Structural and Molecular Biology · GBNovo Nordisk Foundation · DKUnited States Department of Energy · USUniversity of Oxford · GBUniversity of Surrey · GB

Funding

Biotechnology and Biological Sciences Research Council BB/L000423/1
6 · The paper itself

Abstract

Lytic polysaccharide monooxygenases (LPMOs) are redox-enzymes involved in biomass degradation. All characterized LPMOs possess an active site of two highly conserved histidine residues coordinating a copper ion (the histidine brace), which are essential for LPMO activity. However, some protein sequences that belong to the AA9 LPMO family display a natural N-terminal His to Arg substitution (Arg-AA9). These are found almost entirely in the phylogenetic fungal class

Indexed as

HistidineAmino Acid MotifsAmino Acid SequenceAmino Acid SubstitutionBinding SitesLigandsMixed Function OxygenasesModels, MolecularPhosphorylationPhylogenyPolysaccharidesHistidineLigandsMixed Function OxygenasesPolysaccharidesbiomass degradationcopper monooxygenasecrystal structureglycobiologyHis-braceN-terminal Arg-AA9phosphorylationpolysaccharidexylooligosaccharide

Identifiers

PMID31471321
PMCPMC6851306
OpenAlexW2970787300

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.