Evidence map›Paper›PMID 31471305›Full record

ArticleApplied and environmental microbiology2019

Strain-Specific Metabolic Requirements Revealed by a Defined Minimal Medium for Systems Analyses of

Henrique Machado, Liam L Weng, Nicholas Dillon, Yara Seif, Michelle Holland, Jonathan E Pekar, Jonathan M Monk, Victor Nizet, Bernhard O Palsson, Adam M Feist

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Growth and acetate metabolism ofApplied and environmental microbiology · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Analysis of genetic requirements and nutrient availability forbioRxiv : the preprint server for biology · 2024
    Article
  9. Article
  10. SCCBiofilm · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. International journal of molecular sciences · 2020
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Henrique Machado *Department of Bioengineering, University of California San Diego, La Jolla, California, USA.
Liam L Weng *Department of Bioengineering, University of California San Diego, La Jolla, California, USA.
Nicholas DillonCollaborative to Halt Antibiotic-Resistant Microbes, Department of Pediatrics, University of California San Diego, La Jolla, California, USA.
Yara SeifDepartment of Bioengineering, University of California San Diego, La Jolla, California, USA.
Michelle HollandDepartment of Bioengineering, University of California San Diego, La Jolla, California, USA.
Jonathan E PekarDepartment of Bioengineering, University of California San Diego, La Jolla, California, USA.
Jonathan M MonkDepartment of Bioengineering, University of California San Diego, La Jolla, California, USA.
Victor NizetCollaborative to Halt Antibiotic-Resistant Microbes, Department of Pediatrics, University of California San Diego, La Jolla, California, USA.ORCID 0000-0003-3847-0422
Bernhard O PalssonDepartment of Bioengineering, University of California San Diego, La Jolla, California, USA.
Adam M FeistDepartment of Bioengineering, University of California San Diego, La Jolla, California, USA afeist@ucsd.edu.
University of California San Diego · USNovo Nordisk Foundation · DK

Funding

Systems Biology Approach to Redefine Susceptibility Testing and Treatment of MDR Pathogens in the Context of Host ImmunityU01AI124316 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PALSSON, BERNHARD O · 2016 to 2020
$10.2M
NIAID NIH HHS U01 AI124316
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

Systems AnalysisAnti-Bacterial AgentsBacterial ProteinsHigh-Throughput Nucleotide SequencingHumansMicrobial Sensitivity TestsPhenotypeStaphylococcal InfectionsStaphylococcus aureusSystems BiologyVirulenceAnti-Bacterial AgentsBacterial Proteinsadaptive laboratory evolutionStaphylococcus aureussystems biology

Identifiers

PMID31471305
PMCPMC6803309
OpenAlexW2970939825

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.