Evidence map›Paper›PMID 31468725›Full record

ArticleMicrobial biotechnology2020

Metabolic engineering of Pseudomonas putida for increased polyhydroxyalkanoate production from lignin.

Davinia Salvachúa, Thomas Rydzak, Raquel Auwae, Annette De Capite, Brenna A Black, Jason T Bouvier, Nicholas S Cleveland, Joshua R Elmore, Jay D Huenemann, Rui Katahira and 6 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Microbial biotechnology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
8.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 201 citations in OpenAlex.

  1. Article
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  3. Platform Potential ofJournal of agricultural and food chemistry · 2026
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  8. EngineeredmSphere · 2025
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  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Impact ofEngineering microbiology · 2024
    Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 1 country.

Davinia SalvachúaNational Bioenergy Center, National Renewable Energy Laboratory, Golden, CO, 80401, USA.
Thomas RydzakBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Raquel AuwaeBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Annette De CapiteBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Brenna A BlackNational Bioenergy Center, National Renewable Energy Laboratory, Golden, CO, 80401, USA.
Jason T BouvierBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Nicholas S ClevelandNational Bioenergy Center, National Renewable Energy Laboratory, Golden, CO, 80401, USA.
Joshua R ElmoreBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Jay D HuenemannBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Rui KatahiraNational Bioenergy Center, National Renewable Energy Laboratory, Golden, CO, 80401, USA.
William E MichenerNational Bioenergy Center, National Renewable Energy Laboratory, Golden, CO, 80401, USA.
Darren J PetersonNational Bioenergy Center, National Renewable Energy Laboratory, Golden, CO, 80401, USA.
Holly RohrerNational Bioenergy Center, National Renewable Energy Laboratory, Golden, CO, 80401, USA.
Derek R VardonNational Bioenergy Center, National Renewable Energy Laboratory, Golden, CO, 80401, USA.
Gregg T BeckhamNational Bioenergy Center, National Renewable Energy Laboratory, Golden, CO, 80401, USA.
Adam M GussBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.ORCID 0000-0001-5823-5329
National Laboratory of the Rockies · USOak Ridge National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microbial conversion offers a promising strategy for overcoming the intrinsic heterogeneity of the plant biopolymer, lignin. Soil microbes that natively harbour aromatic-catabolic pathways are natural choices for chassis strains, and Pseudomonas putida KT2440 has emerged as a viable whole-cell biocatalyst for funnelling lignin-derived compounds to value-added products, including its native carbon storage product, medium-chain-length polyhydroxyalkanoates (mcl-PHA). In this work, a series of metabolic engineering targets to improve mcl-PHA production are combined in the P. putida chromosome and evaluated in strains growing in a model aromatic compound, p-coumaric acid, and in lignin streams. Specifically, the PHA depolymerase gene phaZ was knocked out, and the genes involved in β-oxidation (fadBA1 and fadBA2) were deleted. Additionally, to increase carbon flux into mcl-PHA biosynthesis, phaG, alkK, phaC1 and phaC2 were overexpressed. The best performing strain - which contains all the genetic modifications detailed above - demonstrated a 53% and 200% increase in mcl-PHA titre (g l

Indexed as

PolyhydroxyalkanoatesPseudomonas putidaLigninMetabolic EngineeringLigninPolyhydroxyalkanoates

Identifiers

PMID31468725
PMCPMC6922519
OpenAlexW2970658357

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.