Evidence map›Paper›PMID 31468362›Full record

ArticleJournal of applied genetics2019

Differentially methylated region in bovine MIMT1 detected by small-scale whole-genome methylation sequencing.

Karolina Rutkowska, Hongen Xu, Krzysztof Flisikowski

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of applied genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. DNA methylation studies in cattle.Journal of applied genetics · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Karolina RutkowskaInstitute of Genetics and Animal Breeding of the Polish Academy of Sciences, Postepu 36a, 05-552, Jastrzebiec, Poland.
Hongen XuChair of Livestock Biotechnology, Technische Universität München, Liesel-Beckmann str. 1, 85354, Freising, Germany.
Krzysztof FlisikowskiChair of Livestock Biotechnology, Technische Universität München, Liesel-Beckmann str. 1, 85354, Freising, Germany. flisikowski@wzw.tum.de.ORCID http://orcid.org/0000-0001-5599-8558
Technical University of Munich · DEPolish Academy of Sciences · PL

Funding

Narodowym Centrum Nauki 2016/23/N/NZ9/00232
6 · The paper itself

Abstract

We previously showed that deregulation of PEG3 domain genes is associated with intrauterine growth restriction (IUGR) in cattle. Here, we carried out genome-wide DNA methylation analysis of foetal placenta in two IUGR and wild-type samples and identified a differentially methylated region (DMR) in intron 2 of MIMT1. Pyrosequencing on a larger sample size (n = 20) confirmed significantly lower (P < 0.001) MIMT1-DMR methylation in foetal and maternal placenta of IUGR than wild-type conceptuses. Our study demonstrates that small-scale whole-genome bisulphite sequencing can be used to identify epigenetic regulatory elements in a defined genome locus.

Indexed as

AnimalsCattleCattle DiseasesDNA MethylationEpigenesis, GeneticFemaleFetal Growth RetardationGene Expression Regulation, DevelopmentalIntronsPlacentaPregnancyWhole Genome SequencingCattleDNA methylationIntrauterine growth restrictionPEG3Placenta

Identifiers

PMID31468362
OpenAlexW2971216716

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.