Evidence map›Paper›PMID 31468345›Full record

ArticleBotanical studies2019

Genomic and phenotypic evaluation of rice susceptible check TN1 collected in Taiwan.

Yi Li, Yung-Fen Huang, Shou-Horng Huang, Yun-Hung Kuang, Chih-Wei Tung, Chung-Ta Liao, Wen-Po Chuang

Abstract read
In one paragraph

Article in Botanical studies, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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  6. Optimized RNA-Silencing Strategies forPlants (Basel, Switzerland) · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yi LiDepartment of Agronomy, National Taiwan University, Taipei, 10617, Taiwan.
Yung-Fen HuangDepartment of Agronomy, National Taiwan University, Taipei, 10617, Taiwan.
Shou-Horng HuangDepartment of Plant Protection, Chiayi Agricultural Experiment Station, Taiwan Agricultural Research Institute, COA, Chiayi, 60044, Taiwan.
Yun-Hung KuangDepartment of Agronomy, National Taiwan University, Taipei, 10617, Taiwan.
Chih-Wei TungDepartment of Agronomy, National Taiwan University, Taipei, 10617, Taiwan.
Chung-Ta LiaoCrop Enviroment Division, Taichung District Agricultural Research and Extension Station, COA, Dacun Township, Changhua County, 51544, Taiwan.
Wen-Po ChuangDepartment of Agronomy, National Taiwan University, Taipei, 10617, Taiwan. wenpo@ntu.edu.tw.ORCID http://orcid.org/0000-0001-6937-3583

Funding

National Science Council 105-2815-C-002-077-BNational Science Council 106-2311-B-002-025National Science Council 107-2311-B-002-018-MY3
6 · The paper itself

Abstract

backgroundTaichung Native 1 (TN1), a variety of rice (Oryza sativa L.) developed in Taiwan, has played a key role in the green revolution of this major staple crop because of its semi-dwarf characteristics. Due to its susceptibility, it has been used as a susceptibility indicator in rice insect and pathogen resistance studies worldwide. While within-variety differences have been reported for agronomic traits in other rice varieties, no study has addressed the within-variety consistency of pathogen and insect susceptibility of TN1, which would influence the result interpretation of plant-pest interaction studies. Therefore, the objective of this study was to evaluate the genomic consistency and to assess a range of agronomic and insect susceptibility traits in three representative accessions of TN1 in Taiwan.

resultsAmong these three accessions, two were identical across 43,325 genome-wide single nucleotide polymorphisms (SNPs) while the third one differed at four SNPs. Of the three accessions of TN1, there were minor differences in seed length, seed breadth, length/width ratio, number of leaves and tillers, and number of unfilled seeds. Besides, there was no effect on relative growth rate of Cnaphalocrocis medinalis larvae fed on the three accession sources. Furthermore, there is no different on plant susceptibility among these three accessions against C. medinalis and Nilaparvata lugens.

conclusionOur study indicates that it is appropriate to use TN1 in Taiwan to test for rice insect susceptibility as it yields consistent results.

Indexed as

Cnaphalocrocis medinalisInsect susceptibilityNilaparvata lugensTN1

Identifiers

PMID31468345
PMCPMC6715756

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.