Evidence map›Paper›PMID 31467851›Full record

ArticleMolecular genetics and metabolism reports2019

Hydrophobic sand is a viable method of urine collection from the rat for extracellular vesicle biomarker analysis.

Jessica F Hoffman, Ivan J Vechetti, Alexander P Alimov, John F Kalinich, John J McCarthy, Charlotte A Peterson

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics and metabolism reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Jessica F HoffmanInternal Contamination and Metal Toxicity Program, Armed Forces Radiobiology Research Institute, Uniformed Services University, 8901 Wisconsin Avenue, Bethesda, MD 20889, USA.
Ivan J VechettiDepartment of Physiology, College of Medicine, University of Kentucky, 800 South Rose Street, Lexington, KY 40536, USA.
Alexander P AlimovDepartment of Physiology, College of Medicine, University of Kentucky, 800 South Rose Street, Lexington, KY 40536, USA.
John F KalinichInternal Contamination and Metal Toxicity Program, Armed Forces Radiobiology Research Institute, Uniformed Services University, 8901 Wisconsin Avenue, Bethesda, MD 20889, USA.
John J McCarthyDepartment of Physiology, College of Medicine, University of Kentucky, 800 South Rose Street, Lexington, KY 40536, USA.
Charlotte A PetersonCollege of Health Sciences, University of Kentucky, 800 South Rose Street, Lexington, KY 40536, USA.
University of Kentucky · USUniformed Services University of the Health Sciences · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Previously we have shown in rats a new method of urine collection, hydrophobic sand, to be an acceptable alternate in place of the traditional method using metabolic cages. Hydrophobic sand is non-toxic, induces similar or lower levels of stress in the rat, and does not contaminate clinical urine markers nor metal concentrations in collected samples (Hoffman et al., 2017 and 2018). Urine is often used in humans and many animal models as a readily-attainable biosample which contains proteins and microRNAs (miRNAs) within extracellular vesicles (EVs) that can be isolated to indicate changes in health. In order to ensure hydrophobic sand did not in any way contaminate or disrupt the extraction and analysis of these EVs and miRNAs, we used urine samples from the same 8 rats in the within-subjects crossover experiment comparing hydrophobic sand and metabolic cage collection methods. We isolated EVs and miRNAs from the urine set and examined their quantity and quality between the urine collection methods. We found no significant differences in particle size, particle concentration, total RNA, or the type and abundance of miRNAs contained within the urine EVs due to urine collection method, suggesting hydrophobic sand represents an easy-to-use, non-invasive method to collect rodent urine for EVs and biomarker studies.

Indexed as

EVs, extracellular vesiclesExtracellular vesiclesHydrophobic sandLS, LabSandMC, metabolic cageMetabolic cagemiRNAmiRNAs, microRNAsPKD, polycystic kidney diseaseUrineUrine collection

Identifiers

PMID31467851
PMCPMC6710715
OpenAlexW2969274881

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.