Evidence map›Paper›PMID 31467106›Full record

ArticleMicrobiology resource announcements2019

TwinBLAST: When Two Is Better than One.

Julie C Dunning Hotopp, James Matsumura, Robin E Bromley, David R Riley, Sonia Agrawal, Ben Sparklin, John Mattick, Jonathan Crabtree, Anup Mahurkar

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microbiology resource announcements, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Julie C Dunning HotoppInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA jdhotopp@som.umaryland.edu.
James MatsumuraInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA.
Robin E BromleyInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA.
David R RileyInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA.
Sonia AgrawalInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA.
Ben SparklinInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA.
John MattickInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA.
Jonathan CrabtreeInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA.
Anup MahurkarInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA.

Funding

Extent and Significance of Bacterial DNA Integrations in the Human Cancer GenomeR01CA206188 · NCI · UNIVERSITY OF MARYLAND BALTIMORE · PI DUNNING HOTOPP, JULIE · 2015 to 2020
$3.6M
NCI NIH HHS R01 CA206188
6 · The paper itself

Abstract

Analysis of sequence read pairs can be essential for characterizing structural variation, including junction-spanning pairs of reads (JSPRs) suggesting recent lateral/horizontal gene transfer. TwinBLAST can be used to facilitate this analysis of JSPRs by enabling the visualization and curation of two BLAST reports side by side in a single interface.

Identifiers

PMID31467106
PMCPMC6715876

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.