Evidence map›Paper›PMID 31466342›Full record

ArticleInternational journal of molecular sciences2019

Systematical Analysis of the Protein Targets of Lactoferricin B and Histatin-5 Using Yeast Proteome Microarrays.

Pramod Shah, Wei-Sheng Wu, Chien-Sheng Chen

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Systematic Identification of Protein Targets of Sub5 UsingInternational journal of molecular sciences · 2021
    Article
  6. Membrane-Interacting Antifungal Peptides.Frontiers in cell and developmental biology · 2021
    Review
  7. Peptides for Health Benefits 2019.International journal of molecular sciences · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Pramod ShahGraduate Institute of Systems Biology and Bioinformatics, National Central University, Jhongli 32001, Taiwan.
Wei-Sheng WuDepartment of Electrical Engineering, National Cheng Kung University, Tainan City 701, Taiwan.
Chien-Sheng ChenGraduate Institute of Systems Biology and Bioinformatics, National Central University, Jhongli 32001, Taiwan. cchen103@gmail.com.
National Central University · TWNational Cheng Kung University · TW

Funding

Ministry of Science and Technology Taiwan MOST 104-2320-B-008-002-MY3
6 · The paper itself

Abstract

Antimicrobial peptides (AMPs) have potential antifungal activities; however, their intracellular protein targets are poorly reported. Proteome microarray is an effective tool with high-throughput and rapid platform that systematically identifies the protein targets. In this study, we have used yeast proteome microarrays for systematical identification of the yeast protein targets of Lactoferricin B (Lfcin B) and Histatin-5. A total of 140 and 137 protein targets were identified from the triplicate yeast proteome microarray assays for Lfcin B and Histatin-5, respectively. The Gene Ontology (GO) enrichment analysis showed that Lfcin B targeted more enrichment categories than Histatin-5 did in all GO biological processes, molecular functions, and cellular components. This might be one of the reasons that Lfcin B has a lower minimum inhibitory concentration (MIC) than Histatin-5. Moreover, pairwise essential proteins that have lethal effects on yeast were analyzed through synthetic lethality. A total of 11 synthetic lethal pairs were identified within the protein targets of Lfcin B. However, only three synthetic lethal pairs were identified within the protein targets of Histatin-5. The higher number of synthetic lethal pairs identified within the protein targets of Lfcin B might also be the reason for Lfcin B to have lower MIC than Histatin-5. Furthermore, two synthetic lethal pairs were identified between the unique protein targets of Lfcin B and Histatin-5. Both the identified synthetic lethal pairs proteins are part of the Spt-Ada-Gcn5 acetyltransferase (SAGA) protein complex that regulates gene expression via histone modification. Identification of synthetic lethal pairs between Lfcin B and Histatin-5 and their involvement in the same protein complex indicated synergistic combination between Lfcin B and Histatin-5. This hypothesis was experimentally confirmed by growth inhibition assay.

Indexed as

Antifungal AgentsDrug Resistance, FungalHistatinsLactoferrinProtein Array AnalysisProtein BindingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSynthetic Lethal MutationsTrans-ActivatorsAntifungal AgentsHistatinslactoferricin BLactoferrinSaccharomyces cerevisiae ProteinsSAGA complex, S cerevisiaeTrans-Activatorsantifungal activityantimicrobial peptides (AMPs)Histatin-5Lactoferricin B (Lfcin B)proteome microarraysynergy

Identifiers

PMID31466342
PMCPMC6747642
OpenAlexW2970957144

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.