Evidence map›Paper›PMID 31465454›Full record

ArticlePloS one2019

Comparative genomics of Aeromonas veronii: Identification of a pathotype impacting aquaculture globally.

Hasan C Tekedar, Salih Kumru, Jochen Blom, Andy D Perkins, Matt J Griffin, Hossam Abdelhamed, Attila Karsi, Mark L Lawrence

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 79 citations in OpenAlex.

  1. Article
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  4. Phylogenomic and comparative genomic analyses ofFrontiers in microbiology · 2026
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  9. Comparative analysis of three plasmids fromJAC-antimicrobial resistance · 2024
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  10. Genomic characterization of antimicrobial resistance in 61 aquatic bacterial isolates.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2024
    Article
  11. Article
  12. Article
  13. Complete genome sequence analysis of the multidrug resistantJournal of advanced veterinary and animal research · 2023
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  14. First Isolation and Identification ofAnimals : an open access journal from MDPI · 2023
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  15. Genomic Characterization ofAntibiotics (Basel, Switzerland) · 2023
    Article
  16. Article
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Hasan C TekedarCollege of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, United States of America.ORCID 0000-0001-7678-791X
Salih KumruCollege of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, United States of America.
Jochen BlomBioinformatics & Systems Biology, Justus-Liebig-University Giessen, Giessen, Hesse, Germany.
Andy D PerkinsDepartment of Computer Science and Engineering, Mississippi State University, Mississippi State, Mississippi, United States of America.
Matt J GriffinCollege of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, United States of America.
Hossam AbdelhamedCollege of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, United States of America.
Attila KarsiCollege of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, United States of America.
Mark L LawrenceCollege of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, United States of America.ORCID 0000-0003-4570-5592
Mississippi State University · USJustus-Liebig-Universität Gießen · DE

Funding

Training and Mentoring Core P20GM103476 · NIGMS · UNIVERSITY OF SOUTHERN MISSISSIPPI · PI MICHAEL R GARRETT · 2012 to 2026
$60.2M
NIGMS NIH HHS P20 GM103476
6 · The paper itself

Abstract

Aeromonas veronii is a gram-negative species abundant in aquatic environments that causes disease in humans as well as terrestrial and aquatic animals. In the current study, 41 publicly available A. veronii genomes were compared to investigate distribution of putative virulence genes, global dissemination of pathotypes, and potential mechanisms of virulence. The complete genome of A. veronii strain ML09-123 from an outbreak of motile aeromonas septicemia in farm-raised catfish in the southeastern United States was included. Dissemination of A. veronii strain types was discovered in dispersed geographical locations. Isolate ML09-123 is highly similar to Chinese isolate TH0426, suggesting the two strains have a common origin and may represent a pathotype impacting aquaculture in both countries. Virulence of strain ML09-123 in catfish in a dose-dependent manner was confirmed experimentally. Subsystem category disposition showed the majority of genomes exhibit similar distribution of genomic elements. The type I secretion system (T1SS), type II secretion system (T2SS), type 4 pilus (T4P), and flagellum core elements are conserved in all A. veronii genomes, whereas the type III secretion system (T3SS), type V secretion system (T5SS), type VI secretion system (T6SS), and tight adherence (TAD) system demonstrate variable dispersal. Distribution of mobile elements is dependent on host and geographic origin, suggesting this species has undergone considerable genetic exchange. The data presented here lends insight into the genomic variation of A. veronii and identifies a pathotype impacting aquaculture globally.

Indexed as

GenomicsWater MicrobiologyAeromonas veroniiAnimalsAquacultureGram-Negative Bacterial InfectionsHumansVirulence FactorsVirulence Factors

Identifiers

PMID31465454
PMCPMC6715197
OpenAlexW2970114831

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.