Evidence map›Paper›PMID 31465221›Full record

ArticleJournal of medicinal chemistry2019

Discovery of Novel Pyrazolo-pyridone DCN1 Inhibitors Controlling Cullin Neddylation.

Ho Shin Kim, Jared T Hammill, Daniel C Scott, Yizhe Chen, Jaeki Min, Jonah Rector, Bhuvanesh Singh, Brenda A Schulman, R Kiplin Guy

Open access · greenAbstract read
In one paragraph

Article in Journal of medicinal chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
  2. Review
  3. Inhibiting neddylation: A new strategy for tumor therapy.Journal of pharmaceutical analysis · 2025
    Review
  4. Article
  5. Article
  6. Protein neddylation and its role in health and diseases.Signal transduction and targeted therapy · 2024
    Review
  7. Review
  8. Article
  9. Article
  10. New one-pot synthesis of 4-arylpyrazolo[3,4-Beilstein journal of organic chemistry · 2023
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. [Targeting Cullin-RING E3 ligases for anti-cancer therapy: efforts on drug discovery].Zhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Ho Shin KimDepartment of Pharmaceutical Sciences , University of Kentucky , Lexington , Kentucky 40508 , United States.
Jared T HammillDepartment of Pharmaceutical Sciences , University of Kentucky , Lexington , Kentucky 40508 , United States.
Daniel C ScottDepartment of Structural Biology , St. Jude Children's Research Hospital , Memphis , Tennessee 38105 , United States.
Yizhe ChenDepartment of Pharmaceutical Sciences , University of Kentucky , Lexington , Kentucky 40508 , United States.
Jaeki MinDepartment of Chemical Biology and Therapeutics , St. Jude Children's Research Hospital , Memphis , Tennessee 38105 , United States.
Jonah RectorDepartment of Pharmaceutical Sciences , University of Kentucky , Lexington , Kentucky 40508 , United States.
Bhuvanesh SinghDepartment of Surgery, Laboratory of Epithelial Cancer Biology , Memorial Sloan Kettering Cancer Center , New York New York 10065 , United States.
Brenda A SchulmanDepartment of Structural Biology , St. Jude Children's Research Hospital , Memphis , Tennessee 38105 , United States.
R Kiplin GuyDepartment of Pharmaceutical Sciences , University of Kentucky , Lexington , Kentucky 40508 , United States.ORCID 0000-0002-9638-2060
University of Kentucky · USSt. Jude Children's Research Hospital · USMemorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
Chemical Biology of the Control of Neddylation by DCN1R01CA247365 · NCI · UNIVERSITY OF KENTUCKY · PI GUY, RODNEY KIPLIN, SCHULMAN, BRENDA A · 2019 to 2023
$3.2M
E3-mediated Ubiquitin-like Protein LigationR37GM069530 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI SCHULMAN, BRENDA A · 2014 to 2018
$2.0M
Discovery of Small Molecule Inhibitors of the DCN1-UBC12 InteractionF32GM113310 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI HAMMILL, JARED THOMAS · 2015 to 2016
$100k
NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA021765NCI NIH HHS R01 CA247365NIGMS NIH HHS F32 GM113310NIGMS NIH HHS R37 GM069530
6 · The paper itself

Abstract

Chemical control of cullin neddylation is attracting increased attention based largely on the successes of the NEDD8-activating enzyme (E1) inhibitor pevonedistat. Recently reported chemical probes enable selective and time-dependent inhibition of downstream members of the neddylation trienzymatic cascade including the co-E3, DCN1. In this work, we report the optimization of a novel class of small molecule inhibitors of the DCN1-UBE2M interaction. Rational X-ray co-structure enabled optimization afforded a 25-fold improvement in potency relative to the initial screening hit. The potency gains are largely attributed to additional hydrophobic interactions mimicking the N-terminal acetyl group that drives binding of UBE2M to DCN1. The compounds inhibit the protein-protein interaction, block NEDD8 transfer in biochemical assays, engage DCN1 in cells, and selectively reduce the steady-state neddylation of Cul1 and Cul3 in two squamous carcinoma cell lines harboring DCN1 amplification.

Indexed as

AmidesCarcinoma, Squamous CellCell Line, TumorCell ProliferationCullin ProteinsCyclopentanesDrug DesignFibroblastsGlycineHumansIntracellular Signaling Peptides and ProteinsNEDD8 ProteinProtein DomainsProtein Interaction MappingPyrazolesPyridonesAmidesCUL3 protein, humanCullin 1Cullin ProteinsCyclopentanesDCUN1D1 protein, humanGlycineIntracellular Signaling Peptides and ProteinsNEDD8 ProteinNEDD8 protein, humanpevonedistatPyrazolesPyridonesPyrimidinesReactive Oxygen SpeciesUBE2M protein, humanUbiquitin-Conjugating Enzymes

Identifiers

PMID31465221
PMCPMC7228038
OpenAlexW2970120506

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.