Evidence map›Paper›PMID 31464627›Full record

ArticleGenome biology2019

Raptor genomes reveal evolutionary signatures of predatory and nocturnal lifestyles.

Yun Sung Cho, Je Hoon Jun, Jung A Kim, Hak-Min Kim, Oksung Chung, Seung-Gu Kang, Jin-Young Park, Hwa-Jung Kim, Sunghyun Kim, Hee-Jong Kim and 14 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 23 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 10 institutions in 4 countries.

Yun Sung ChoClinomics Inc, Ulsan, Republic of Korea.
Je Hoon JunClinomics Inc, Ulsan, Republic of Korea.
Jung A KimBiological and Genetic Resources Assessment Division, National Institute of Biological Resources, Incheon, Republic of Korea.
Hak-Min KimKorean Genomics Industrialization Center (KOGIC), Ulsan National Institute of Science and Technology (UNIST), Ulsan, Republic of Korea.
Oksung ChungClinomics Inc, Ulsan, Republic of Korea.
Seung-Gu KangAnimal Resources Division, National Institute of Biological Resources, Incheon, Republic of Korea.
Jin-Young ParkAnimal Resources Division, National Institute of Biological Resources, Incheon, Republic of Korea.
Hwa-Jung KimAnimal Resources Division, National Institute of Biological Resources, Incheon, Republic of Korea.
Sunghyun KimStrategic Planning Division, National Institute of Biological Resources, Incheon, Republic of Korea.
Hee-Jong KimChungnam Wild Animal Rescue Center, Kongju National University, Yesan, Republic of Korea.
Jin-Ho JangChungnam Wild Animal Rescue Center, Kongju National University, Yesan, Republic of Korea.
Ki-Jeong NaCollege of veterinary medicine, Chungbuk National University, Cheongju, Republic of Korea.
Jeongho KimMedical care team, Cheongju Zoo, Cheongju, Republic of Korea.
Seung Gu ParkKorean Genomics Industrialization Center (KOGIC), Ulsan National Institute of Science and Technology (UNIST), Ulsan, Republic of Korea.
Hwang-Yeol LeeClinomics Inc, Ulsan, Republic of Korea.
Andrea ManicaDepartment of Zoology, University of Cambridge, Cambridge, UK.
David P MindellMuseum of Vertebrate Zoology, University of California, Berkeley, CA, USA.
Jérôme FuchsInstitut Systématique Evolution Biodiversité (ISYEB), Muséum national d'Histoire naturelle, CNRS, Sorbonne Université, EPHE, Paris, France.
Jeremy S EdwardsChemistry and Chemical Biology, UNM Comprehensive Cancer Center, University of New Mexico, Albuquerque, NM, USA.
Jessica A WeberMuseum of Southwestern Biology and Department of Biology, University of New Mexico, Albuquerque, NM, USA.
Christopher C WittMuseum of Southwestern Biology and Department of Biology, University of New Mexico, Albuquerque, NM, USA.
Joo-Hong YeoBiological and Genetic Resources Assessment Division, National Institute of Biological Resources, Incheon, Republic of Korea.
Soonok KimBiological and Genetic Resources Assessment Division, National Institute of Biological Resources, Incheon, Republic of Korea. sokim90@korea.kr.
Jong BhakClinomics Inc, Ulsan, Republic of Korea. jongbhak@genomics.org.ORCID 0000-0002-4228-1299
National Institute of Biological Resources · KRKongju National University · KRUniversity of New Mexico · USCheongju University · KRCentre National de la Recherche Scientifique · FRChungbuk National University · KRMuseum of Vertebrate Zoology · USPreClinOmics (United States) · USUlsan National Institute of Science and Technology · KRUniversity of Cambridge · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBirds of prey (raptors) are dominant apex predators in terrestrial communities, with hawks (Accipitriformes) and falcons (Falconiformes) hunting by day and owls (Strigiformes) hunting by night.

resultsHere, we report new genomes and transcriptomes for 20 species of birds, including 16 species of birds of prey, and high-quality reference genomes for the Eurasian eagle-owl (Bubo bubo), oriental scops owl (Otus sunia), eastern buzzard (Buteo japonicus), and common kestrel (Falco tinnunculus). Our extensive genomic analysis and comparisons with non-raptor genomes identify common molecular signatures that underpin anatomical structure and sensory, muscle, circulatory, and respiratory systems related to a predatory lifestyle. Compared with diurnal birds, owls exhibit striking adaptations to the nocturnal environment, including functional trade-offs in the sensory systems, such as loss of color vision genes and selection for enhancement of nocturnal vision and other sensory systems that are convergent with other nocturnal avian orders. Additionally, we find that a suite of genes associated with vision and circadian rhythm are differentially expressed in blood tissue between nocturnal and diurnal raptors, possibly indicating adaptive expression change during the transition to nocturnality.

conclusionsOverall, raptor genomes show genomic signatures associated with the origin and maintenance of several specialized physiological and morphological features essential to be apex predators.

Indexed as

Biological EvolutionGenomeAdaptation, PhysiologicalAnimalsCircadian RhythmPhylogenyPredatory BehaviorRaptorsComparative genomicsDe novo assemblyEvolutionary adaptationNocturnalityPredatory lifestyleRaptor

Identifiers

PMID31464627
PMCPMC6714440
OpenAlexW2971262182

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.