Evidence map›Paper›PMID 31462412›Full record

ArticlemSphere2019

Integrated Meta-omics Reveals a Fungus-Associated Bacteriome and Distinct Functional Pathways in Clostridioides difficile Infection.

David B Stewart, Justin R Wright, Maria Fowler, Christopher J McLimans, Vasily Tokarev, Isabella Amaniera, Owen Baker, Hoi-Tong Wong, Jeff Brabec, Rebecca Drucker and 1 more

Open access · goldAbstract read
In one paragraph

Article in mSphere, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 45 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Frontiers in microbiology · 2024
    Article
  10. Fungal and bacterial gut microbiota differ betweenMicrobiome research reports · 2024
    Article
  11. Review
  12. Gut Microbiota Associated withMicroorganisms · 2023
    Article
  13. Review
  14. Article
  15. Article
  16. Gut Microbiota Composition Associated withPathogens (Basel, Switzerland) · 2022
    Review
  17. Article
  18. Wolf in Sheep's Clothing:Microorganisms · 2021
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

David B StewartDepartment of Surgery, University of Arizona, Tucson, Arizona, USA.
Justin R WrightDepartment of Biology, Juniata College, Huntingdon, Pennsylvania, USA.
Maria FowlerDepartment of Biology, Juniata College, Huntingdon, Pennsylvania, USA.
Christopher J McLimansDepartment of Biology, Juniata College, Huntingdon, Pennsylvania, USA.
Vasily TokarevDepartment of Biology, Juniata College, Huntingdon, Pennsylvania, USA.
Isabella AmanieraDepartment of Biology, Juniata College, Huntingdon, Pennsylvania, USA.
Owen BakerDepartment of Biology, Juniata College, Huntingdon, Pennsylvania, USA.
Hoi-Tong WongDepartment of Biology, Juniata College, Huntingdon, Pennsylvania, USA.
Jeff BrabecDepartment of Biology, Juniata College, Huntingdon, Pennsylvania, USA.
Rebecca DruckerDepartment of Biology, Juniata College, Huntingdon, Pennsylvania, USA.
Regina LamendellaDepartment of Biology, Juniata College, Huntingdon, Pennsylvania, USA LAMENDELLA@juniata.edu.
Juniata College · USUniversity of Arizona · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

There has been no prior application of matched metagenomics and metatranscriptomics in

Indexed as

Gastrointestinal MicrobiomeMetagenomicsTranscriptomeAdultAgedAged, 80 and overBiofilmsClostridioides difficileClostridium InfectionsDiarrheaFecesFungiHumansMetabolic Networks and PathwaysMiddle AgedSequence Analysis, DNAClostridioides difficilemetagenomicsmetatranscriptomicsmicrobiomemycobiome

Identifiers

PMID31462412
PMCPMC6714892
OpenAlexW2970640520

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.