Evidence map›Paper›PMID 31461489›Full record

ArticlePloS one2019

Structural analysis of the recognition of the -35 promoter element by SigW from Bacillus subtilis.

Eunju Kwon, Shankar Raj Devkota, Deepak Pathak, Pawan Dahal, Dong Young Kim

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Structural Analysis ofMicroorganisms · 2023
    Article
  3. Cell Envelope Stress Response in Pseudomonas aeruginosa.Advances in experimental medicine and biology · 2022
    Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Eunju KwonCollege of Pharmacy, Yeungnam University, Gyeongsan, Gyeongbuk, South Korea.
Shankar Raj DevkotaCollege of Pharmacy, Yeungnam University, Gyeongsan, Gyeongbuk, South Korea.
Deepak PathakCollege of Pharmacy, Yeungnam University, Gyeongsan, Gyeongbuk, South Korea.
Pawan DahalCollege of Pharmacy, Yeungnam University, Gyeongsan, Gyeongbuk, South Korea.
Dong Young KimCollege of Pharmacy, Yeungnam University, Gyeongsan, Gyeongbuk, South Korea.ORCID 0000-0001-7594-9083
Yeungnam University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sigma factors are key proteins that mediate the recruitment of RNA polymerase to the promoter regions of genes, for the initiation of bacterial transcription. Multiple sigma factors in a bacterium selectively recognize their cognate promoter sequences, thereby inducing the expression of their own regulons. In this paper, we report the crystal structure of the σ4 domain of Bacillus subtilis SigW bound to the -35 promoter element. Purine-specific hydrogen bonds of the -35 promoter element with the recognition helix α9 of the σ4 domain occurs at three nucleotides of the consensus sequence (G-35, A-34, and G'-31 in G-35A-34A-33A-32C-31C-30T-29). The hydrogen bonds of the backbone with the α7 and α8 of the σ4 domain occurs at G'-30. These results elucidate the structural basis of the selective recognition of the promoter by SigW. In addition, comparison of SigW structures complexed with the -35 promoter element or with anti-sigma RsiW reveals that DNA recognition and anti-sigma factor binding of SigW are mutually exclusive.

Indexed as

Promoter Regions, GeneticAmino Acid SequenceBacillus subtilisBacterial ProteinsConserved SequenceDNA, BacterialModels, MolecularNucleic Acid ConformationSigma FactorStructural Homology, ProteinBacterial ProteinsDNA, BacterialSigma FactorSigW protein, Bacillus subtilis

Identifiers

PMID31461489
PMCPMC6713349
OpenAlexW2971207150

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.