ArticleFrontiers in microbiology2019
Individual Based Model Links Thermodynamics, Chemical Speciation and Environmental Conditions to Microbial Growth.
Article in Frontiers in microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
9 citing papers in PubMed.
- Article
- Is it selfish to be filamentous in biofilms? Individual-based modeling links microbial growth strategies with morphology using the new and modular iDynoMiCS 2.0.PLoS computational biology · 2024Article
- Engineering biology in the face of uncertainty.Interface focus · 2023Article
- Agent-Based Modeling of Microbial Communities.ACS synthetic biology · 2022Review
- Ecological modelling approaches for predicting emergent properties in microbial communities.Nature ecology & evolution · 2022Review
- Interacting Bioenergetic and Stoichiometric Controls on Microbial Growth.Frontiers in microbiology · 2022Article
- Agent Based Models of Polymicrobial Biofilms and the Microbiome-A Review.Microorganisms · 2021Review
- INDISIM-Denitrification, an individual-based model for study the denitrification process.Journal of industrial microbiology & biotechnology · 2020Article
- NUFEB: A massively parallel simulator for individual-based modelling of microbial communities.PLoS computational biology · 2019Article
Corrections and comments
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Authors and funding
12 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Individual based Models (IbM) must transition from research tools to engineering tools. To make the transition we must aspire to develop large, three dimensional and physically and biologically credible models. Biological credibility can be promoted by grounding, as far as possible, the biology in thermodynamics. Thermodynamic principles are known to have predictive power in microbial ecology. However, this in turn requires a model that incorporates pH and chemical speciation. Physical credibility implies plausible mechanics and a connection with the wider environment. Here, we propose a step toward that ideal by presenting an individual based model connecting thermodynamics, pH and chemical speciation and environmental conditions to microbial growth for 5·10
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Registered trials
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