Evidence map›Paper›PMID 31455813›Full record

ArticleScientific reports2019

The complex structure of bile salt hydrolase from Lactobacillus salivarius reveals the structural basis of substrate specificity.

Fuzhou Xu, Xiao-Jian Hu, Warispreet Singh, Wenjing Geng, Irina G Tikhonova, Jun Lin

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 37 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Fuzhou XuDepartment of Animal Science, The University of Tennessee, Knoxville, TN, 37996, USA.
Xiao-Jian HuState Key Laboratory of Genetic Engineering, School of Life Sciences, Collaborative Innovative Centre of Genetics and Development, Fudan University, Shanghai, 200438, China. xjhu@fudan.edu.cn.
Warispreet SinghMolecular Therapeutics, School of Pharmacy, Medical Biology Centre, Queen's University Belfast, BT9 7BL, Northern Ireland, United Kingdom.
Wenjing GengDepartment of Animal Science, The University of Tennessee, Knoxville, TN, 37996, USA.
Irina G TikhonovaMolecular Therapeutics, School of Pharmacy, Medical Biology Centre, Queen's University Belfast, BT9 7BL, Northern Ireland, United Kingdom. i.tikhonova@qub.ac.uk.
Jun LinDepartment of Animal Science, The University of Tennessee, Knoxville, TN, 37996, USA. jlin6@utk.edu.
Queen's University Belfast · GBUniversity of Tennessee at Knoxville · USBeijing Academy of Agricultural and Forestry Sciences · CNFudan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The gut bacterial bile salt hydrolase (BSH) plays a critical role in host lipid metabolism and energy harvest. Therefore, BSH is a promising microbiome target to develop new therapies to regulate obesity in humans and novel non-antibiotic growth promoters for food animals. We previously reported the 1.90 Å apo crystal structure of BSH from Lactobacillus salivarius (lsBSH). In this study, we soaked the lsBSH crystal with glycocholic acid (GCA), a substrate, and obtained a 2.10 Å structure containing complex of lsBSH bound to GCA and cholic acid (CA), a product. The substrate/product sits in the water-exposed cavity molded by Loops 2 and 3. While the glycine moiety of GCA is exposed into a highly polar pocket, the sterane core of GCA is stabilized by aromatic and hydrophobic interactions. Comparison of product binding with BSH from Clostridium perfringenes reveals a distinct orientation of the sterane core in the binding site. The stability of the substrate-lsBSH complex and the putative catalytic mechanism were explored with molecular dynamics simulations. Site-directed mutagenesis of lsBSH demonstrated that Cys2 and Asn171 are critical for enzymatic activity, while Tyr24, Phe65 and Gln257 contribute to the substrate specificity. Together, this study provides structural insights into BSH-substrate interaction, the mechanism of catalysis and substrate specificity, which facilitate rational design of BSH inhibitors.

Indexed as

Molecular Dynamics SimulationAmidohydrolasesBacterial ProteinsLigilactobacillus salivariusProtein DomainsProtein Structure, SecondarySubstrate SpecificityAmidohydrolasesBacterial Proteinscholoylglycine hydrolase

Identifiers

PMID31455813
PMCPMC6711994
OpenAlexW2970342166

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.