Evidence map›Paper›PMID 31455759›Full record

SynthesisTranslational psychiatry2019

The schizophrenia genetics knowledgebase: a comprehensive update of findings from candidate gene studies.

Chenxing Liu, Tetsufumi Kanazawa, Ye Tian, Suriati Mohamed Saini, Serafino Mancuso, Md Shaki Mostaid, Atsushi Takahashi, Dai Zhang, Fuquan Zhang, Hao Yu and 13 more

Abstract readMeta-Analysis
In one paragraph

Synthesis in Translational psychiatry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Genetic risks of schizophrenia identified in a matched case-control study.European archives of psychiatry and clinical neuroscience · 2021
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Chenxing LiuMelbourne Neuropsychiatry Centre, Department of Psychiatry, University of Melbourne, Melbourne, VIC, Australia. chl284@pitt.edu.
Tetsufumi KanazawaMelbourne Neuropsychiatry Centre, Department of Psychiatry, University of Melbourne, Melbourne, VIC, Australia.
Ye TianMelbourne Neuropsychiatry Centre, Department of Psychiatry, University of Melbourne, Melbourne, VIC, Australia.
Suriati Mohamed SainiMelbourne Neuropsychiatry Centre, Department of Psychiatry, University of Melbourne, Melbourne, VIC, Australia.ORCID http://orcid.org/0000-0001-9528-4939
Serafino MancusoMelbourne Neuropsychiatry Centre, Department of Psychiatry, University of Melbourne, Melbourne, VIC, Australia.
Md Shaki MostaidMelbourne Neuropsychiatry Centre, Department of Psychiatry, University of Melbourne, Melbourne, VIC, Australia.ORCID http://orcid.org/0000-0002-9229-651X
Atsushi TakahashiLaboratory for Statistical Analysis, RIKEN Center for Integrative, Medical Sciences, Yokohama, Japan.
Dai ZhangInstitute of Mental Health, Peking University Sixth Hospital, Beijing, China.
Fuquan ZhangDepartment of Psychiatry, The Affiliated Wuxi Mental Health Center of Nanjing Medical University, Wuxi, China.
Hao YuInstitute of Mental Health, Peking University Sixth Hospital, Beijing, China.
Hyoung Doo ShinDepartment of Genetic Epidemiology, SNP Genetics, Inc., Seoul, Korea.
Hyun Sub CheongDepartment of Genetic Epidemiology, SNP Genetics, Inc., Seoul, Korea.
Masashi IkedaDepartment of Psychiatry, Fujita Health University School of Medicine, Toyoake, Japan.
Michiaki KuboRIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Nakao IwataDepartment of Psychiatry, Fujita Health University School of Medicine, Toyoake, Japan.
Sung-Il WooSoon Chun Hyang University Hospital, Seoul, Korea.
Weihua YueInstitute of Mental Health, Peking University Sixth Hospital, Beijing, China.ORCID http://orcid.org/0000-0002-1201-8465
Yoichiro KamataniRIKEN Center for Integrative Medical Sciences, Yokohama, Japan.ORCID http://orcid.org/0000-0001-8748-5597
Yongyong ShiBio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders, Ministry of Education, Shanghai Jiao Tong University, Shanghai, China.ORCID http://orcid.org/0000-0003-1710-1505
Zhiqiang LiBio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders, Ministry of Education, Shanghai Jiao Tong University, Shanghai, China.ORCID http://orcid.org/0000-0002-0174-9254
Ian EverallInstitute of Psychiatry, Psychology, and Neuroscience, King's College London, London, UK.
Christos PantelisMelbourne Neuropsychiatry Centre, Department of Psychiatry, University of Melbourne, Melbourne, VIC, Australia.ORCID http://orcid.org/0000-0002-9565-0238
Chad BousmanMelbourne Neuropsychiatry Centre, Department of Psychiatry, University of Melbourne, Melbourne, VIC, Australia. chad.bousman@ucalgary.ca.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Over 3000 candidate gene association studies have been performed to elucidate the genetic underpinnings of schizophrenia. However, a comprehensive evaluation of these studies' findings has not been undertaken since the decommissioning of the schizophrenia gene (SzGene) database in 2011. As such, we systematically identified and carried out random-effects meta-analyses for all polymorphisms with four or more independent studies in schizophrenia along with a series of expanded meta-analyses incorporating published and unpublished genome-wide association (GWA) study data. Based on 550 meta-analyses, 11 SNPs in eight linkage disequilibrium (LD) independent loci showed Bonferroni-significant associations with schizophrenia. Expanded meta-analyses identified an additional 10 SNPs, for a total of 21 Bonferroni-significant SNPs in 14 LD-independent loci. Three of these loci (MTHFR, DAOA, ARVCF) had never been implicated by a schizophrenia GWA study. In sum, the present study has provided a comprehensive summary of the current schizophrenia genetics knowledgebase and has made available all the collected data as a resource for the research community.

Indexed as

Genetic Predisposition to DiseaseLinkage DisequilibriumPolymorphism, Single NucleotideAllelesGene FrequencyGenetic Association StudiesGenetic LociHumansKnowledge BasesSchizophrenia

Identifiers

PMID31455759
PMCPMC6711957

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.