Evidence map›Paper›PMID 31455635›Full record

ArticleThe Journal of biological chemistry2019

A whole-cell, high-throughput hydrogenase assay to identify factors that modulate [NiFe]-hydrogenase activity.

Michael J Lacasse, Stephanie Sebastiampillai, Jean-Philippe Côté, Nicholas Hodkinson, Eric D Brown, Deborah B Zamble

Abstract readEvaluation Study
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Differential Contribution of Hydrogen Metabolism toPathogens (Basel, Switzerland) · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Michael J LacasseDepartment of Chemistry, University of Toronto, Toronto, Ontario M5S 3H6, Canada.
Stephanie SebastiampillaiDepartment of Chemistry, University of Toronto, Toronto, Ontario M5S 3H6, Canada.
Jean-Philippe CôtéDepartment of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario L8N 3Z5, Canada.
Nicholas HodkinsonDepartment of Chemistry, University of Toronto, Toronto, Ontario M5S 3H6, Canada.
Eric D BrownDepartment of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario L8N 3Z5, Canada.
Deborah B ZambleDepartment of Chemistry, University of Toronto, Toronto, Ontario M5S 3H6, Canada deborah.zamble@utoronto.ca.ORCID 0000-0002-8976-3375

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

[NiFe]-hydrogenases have attracted attention as potential therapeutic targets or components of a hydrogen-based economy. [NiFe]-hydrogenase production is a complicated process that requires many associated accessory proteins that supply the requisite cofactors and substrates. Current methods for measuring hydrogenase activity have low throughput and often require specialized conditions and reagents. In this work, we developed a whole-cell high-throughput hydrogenase assay based on the colorimetric reduction of benzyl viologen to explore the biological networks of these enzymes in

Indexed as

Catalytic DomainEnzyme AssaysEscherichia coliEscherichia coli ProteinsHydrogenaseNickelSingle-Cell AnalysisEscherichia coli ProteinsHydrogenaseNickelnickel-iron hydrogenaseenzyme processingEscherichia coli (E. coli)formate hydrogenlyasefumarate and nitrate reduction (FNR)high-throughput screening (HTS)hydrogenaseKeio collectionmetal homeostasismetalloenzymenickelnickel-iron hydrogenasewhole-cell assay

Identifiers

PMID31455635
PMCPMC6802511

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.