Evidence map›Paper›PMID 31455634›Full record

ArticleThe Journal of biological chemistry2019

The mammalian host protein DAP5 facilitates the initial round of translation of Coxsackievirus B3 RNA.

Pratik Dave, Biju George, Harsha Raheja, Priya Rani, Padmanava Behera, Saumitra Das

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
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  8. Article
  9. Review
  10. Lost in Translation: When the Rules Do Not Apply.Wiley interdisciplinary reviews. RNA
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Pratik DaveDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore 560012, India.
Biju GeorgeDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore 560012, India.ORCID 0000-0003-4048-6650
Harsha RahejaDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore 560012, India.
Priya RaniDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore 560012, India.
Padmanava BeheraDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore 560012, India.ORCID 0000-0002-6360-4704
Saumitra DasDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore 560012, India sdas@iisc.ac.in.ORCID 0000-0002-7032-812X
Indian Institute of Science Bangalore · INNational Institute of Biomedical Genomics · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During enteroviral infections, the canonical translation factor eukaryotic translation initiation factor 4 γ I (eIF4GI) is cleaved by viral protease 2A. The resulting C-terminal fragment is recruited by the viral internal ribosome entry site (IRES) for efficient translation of the viral RNA. However, the 2A protease is not present in the viral capsid and is synthesized only after the initial round of translation. This presents the conundrum of how the initial round of translation occurs in the absence of the C-terminal eIF4GI fragment. Interestingly, the host protein DAP5 (also known as p97, eIF4GIII, and eIF4G2), an isoform of eIF4GI, closely resembles the eIF4GI C-terminal fragment produced after 2A protease-mediated cleavage. Using the Coxsackievirus B3 (CVB3) IRES as a model system, here we demonstrate that DAP5, but not the full-length eIF4GI, is required for CVB3 IRES activity for translation of input viral RNA. Additionally, we show that DAP5 is specifically required by type I IRES but not by type II or type III IRES, in which cleavage of eIF4GI has not been observed. We observed that both DAP5 and C-terminal eIF4GI interact with CVB3 IRES in the same region, but DAP5 exhibits a lower affinity for CVB3 IRES compared with the C-terminal eIF4GI fragment. It appears that DAP5 is required for the initial round of viral RNA translation by sustaining a basal level of CVB3 IRES activity. This activity leads to expression of 2A protease and consequent robust CVB3 IRES-mediated translation by the C-terminal eIF4GI fragment.

Indexed as

Coxsackievirus InfectionsEnterovirus B, HumanEukaryotic Initiation Factor-4GGene Expression Regulation, ViralHeLa CellsHost-Pathogen InteractionsHumansInternal Ribosome Entry SitesProtein BiosynthesisRibosomesRNA, ViralEIF4G2 protein, humanEukaryotic Initiation Factor-4GInternal Ribosome Entry SitesRNA, ViralCoxsackievirus B3DAP5eukaryotic translation initiationeukaryotic translation initiation factor 4G (eIF4G)internal initiation of translationIRES mediated translationRNA virustranslationviral protease

Identifiers

PMID31455634
PMCPMC6802510
OpenAlexW2970547302

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.