Evidence map›Paper›PMID 31454446›Full record

ArticleEnvironmental microbiology2019

Metatranscriptomic and metabolite profiling reveals vertical heterogeneity within a Zygnema green algal mat from Svalbard (High Arctic).

Martin Rippin, Martina Pichrtová, Erwann Arc, Ilse Kranner, Burkhard Becker, Andreas Holzinger

Open access · hybridAbstract read
In one paragraph

Article in Environmental microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
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  12. Review
  13. Zygospores of the green algaFrontiers in plant science · 2022
    Article
  14. Article
  15. Article
  16. Article
  17. Characterization of TwoFrontiers in plant science · 2021
    Article
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Martin RippinUniversity of Cologne, Botanical Institute, Cologne, Germany.ORCID 0000-0003-4362-0122
Martina PichrtováDepartment of Botany, Charles University, Prague, Czech Republic.ORCID 0000-0002-6003-9666
Erwann ArcDepartment of Botany, University of Innsbruck, Innsbruck, Austria.ORCID 0000-0003-2344-1426
Ilse KrannerDepartment of Botany, University of Innsbruck, Innsbruck, Austria.ORCID 0000-0003-4959-9109
Burkhard BeckerUniversity of Cologne, Botanical Institute, Cologne, Germany.ORCID 0000-0002-7965-1396
Andreas HolzingerDepartment of Botany, University of Innsbruck, Innsbruck, Austria.ORCID 0000-0002-7745-3978
Universität Innsbruck · ATUniversity of Cologne · DECharles University · CZ

Funding

Austrian Science Fund I 1951-B16Austrian Science Fund P 24242-B16Austrian Science Fund FWF I 1951Austrian Science Fund FWF P 24242Deutsche Forschungsgemeinschaft Be 1779/18-1Deutsche Forschungsgemeinschaft SPP1158Grantová Agentura České Republiky 15-34645L
6 · The paper itself

Abstract

Within streptophyte green algae Zygnematophyceae are the sister group to the land plants that inherited several traits conferring stress protection. Zygnema sp., a mat-forming alga thriving in extreme habitats, was collected from a field site in Svalbard, where the bottom layers are protected by the top layers. The two layers were investigated by a metatranscriptomic approach and GC-MS-based metabolite profiling. In the top layer, 6569 genes were significantly upregulated and 149 were downregulated. Upregulated genes coded for components of the photosynthetic apparatus, chlorophyll synthesis, early light-inducible proteins, cell wall and carbohydrate metabolism, including starch-degrading enzymes. An increase in maltose in the top layer and degraded starch grains at the ultrastructural levels corroborated these findings. Genes involved in amino acid, redox metabolism and DNA repair were upregulated. A total of 29 differentially accumulated metabolites (out of 173 identified ones) confirmed higher metabolic turnover in the top layer. For several of these metabolites, differential accumulation matched the transcriptional changes of enzymes involved in associated pathways. In summary, the findings support the hypothesis that in a Zygnema mat the top layer shields the bottom layers from abiotic stress factors such as excessive irradiation.

Indexed as

Arctic RegionsChlorophytaEcosystemMetabolomePhotosynthesisStreptophytaStress, PhysiologicalSvalbardTranscriptome

Identifiers

PMID31454446
PMCPMC6899726
OpenAlexW2970131027

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.