Evidence map›Paper›PMID 31453253›Full record

ArticleJournal of biological methods2018

A highly-simplified and inexpensive MALDI-TOF mass spectrometry sample-preparation method with broad applicability to microorganisms, plants, and insects.

Michael A Reeve, Alan G Buddie, Kathryn M Pollard, Sonal Varia, Marion K Seier, Lisa C Offord, Matthew J W Cock

Open access · diamondAbstract read
In one paragraph

Article in Journal of biological methods, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 18 citations in OpenAlex.

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  8. Spectral Grouping of NominallyMicroorganisms · 2019
    Article
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  10. Identification ofBiology methods & protocols · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Michael A ReeveCABI, Bakeham Lane, Egham, Surrey, TW20 9 TY, UK.
Alan G BuddieCABI, Bakeham Lane, Egham, Surrey, TW20 9 TY, UK.
Kathryn M PollardCABI, Bakeham Lane, Egham, Surrey, TW20 9 TY, UK.
Sonal VariaCABI, Bakeham Lane, Egham, Surrey, TW20 9 TY, UK.
Marion K SeierCABI, Bakeham Lane, Egham, Surrey, TW20 9 TY, UK.
Lisa C OffordCABI, Bakeham Lane, Egham, Surrey, TW20 9 TY, UK.
Matthew J W CockCABI, Bakeham Lane, Egham, Surrey, TW20 9 TY, UK.
Tyndall Centre · GBCAB International · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Matrix-assisted laser-desorption and ionization time-of-flight mass spectrometry prepares proteins intact in the gas phase with predominantly a single positive charge. The times-of-flight of charged proteins along a tube held at high vacuum after acceleration in an electrical field are proportional to the square root of the mass-over-charge ratios for the proteins, thereby allowing a mass spectrum to be generated, which can then be used to characterize or identify a protein-containing sample. Several sample-preparation methods are currently available but not all of these are applicable to some forms of fungal biomass and few of these are well suited to the analysis of plant or insect material. We have therefore developed a simplified method that: lyses cells, selectively solubilizes basic proteins, dissolves matrix to a suitable concentration, generates spectra with good intensity and peak richness, costs no more (and generally less) than current methods, and is not constrained in terms of throughput by the availability of centrifuges. Using this method, and a reagent formulation comprising α-cyano-4-hydroxycinnamic acid matrix close to saturation in 60%-65% (v/v) acetonitrile in water containing 2.5% (v/v) trifluoroacetic acid, we have been able to differentiate between strains for a representative subset of aflatoxin-producing and aflatoxin-non-producing strains of

Indexed as

reagent optimizationsample-preparationspecies discriminationsubspecies discrimination

Identifiers

PMID31453253
PMCPMC6706156
OpenAlexW2901504323

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.