Evidence map›Paper›PMID 31452977›Full record

ArticleBiomedical optics express2019

RAC-CNN: multimodal deep learning based automatic detection and classification of rod and cone photoreceptors in adaptive optics scanning light ophthalmoscope images.

David Cunefare, Alison L Huckenpahler, Emily J Patterson, Alfredo Dubra, Joseph Carroll, Sina Farsiu

Abstract read
In one paragraph

Article in Biomedical optics express, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Clinical Application of Adaptive Optics Imaging in Diagnosis, Management, and Monitoring of Ophthalmological Diseases: A Narrative Review.Medical science monitor : international medical journal of experimental and clinical research · 2023
    Review
  7. Article
  8. Adaptive Optics Imaging of Inherited Retinal Disease.Cold Spring Harbor perspectives in medicine · 2023
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Theoretical versus empirical measures of retinal magnification for scaling AOSLO images.Journal of the Optical Society of America. A, Optics, image science, and vision · 2021
    Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

David CunefareDepartment of Biomedical Engineering, Duke University, Durham, NC 27708, USA.
Alison L HuckenpahlerDepartment of Cell Biology, Neurobiology, & Anatomy, Medical College of Wisconsin, Milwaukee, WI 53226, USA.
Emily J PattersonDepartment of Ophthalmology & Visual Sciences, Medical College of Wisconsin, Milwaukee, WI 53226, USA.
Alfredo DubraDepartment of Ophthalmology, Stanford University, Palo Alto, CA 94303, USA.
Joseph CarrollDepartment of Cell Biology, Neurobiology, & Anatomy, Medical College of Wisconsin, Milwaukee, WI 53226, USA.
Sina FarsiuDepartment of Biomedical Engineering, Duke University, Durham, NC 27708, USA.ORCID https://orcid.org/0000-0003-4872-2902

Funding

VISION RESEARCHP30EY005722 · NEI · DUKE UNIVERSITY · PI Vadim Y Arshavsky · 1985 to 2026
$19.3M
MORPHOLOGY MODULEP30EY001931 · NEI · MEDICAL COLLEGE OF WISCONSIN · PI O'BRIEN, WILLIAM J · 1985 to 2016
$9.8M
Assessing Photoreceptor Structure and Function in Normal and Diseased RetinaeR01EY017607 · NEI · MEDICAL COLLEGE OF WISCONSIN · PI Joseph Carroll · 2008 to 2026
$8.3M
Stanford Vision Research CoreP30EY026877 · NEI · STANFORD UNIVERSITY · PI Jeffrey L Goldberg · 2017 to 2026
$8.0M
Medical Scientist Training ProgramT32GM080202 · NIGMS · MEDICAL COLLEGE OF WISCONSIN · PI BARBIERI, JOSEPH T, SALZMAN, NITA H · 2010 to 2024
$5.7M
Platform Technologies for Microscopic Retinal Imaging: Development & TranslationU01EY025477 · NEI · STANFORD UNIVERSITY · PI DUBRA, ALFREDO · 2015 to 2019
$4.4M
Training in Medical ImagingT32EB001040 · NIBIB · DUKE UNIVERSITY · PI NIGHTINGALE, KATHRYN RADABAUGH · 2003 to 2018
$4.4M
Handheld Portable Adaptive Optics Scanning Laser Ophthalmoscope for Imaging Young ChildrenR21EY027086 · NEI · DUKE UNIVERSITY · PI FARSIU, SINA, IZATT, JOSEPH A · 2016 to 2017
$425k
Handheld Portable Adaptive Optics Optical Coherence Tomography for Imaging Young ChildrenR21EY029804 · NEI · DUKE UNIVERSITY · PI FARSIU, SINA, IZATT, JOSEPH A · 2019 to 2020
$424k
Noninvasive Assessment of Pathophysiology in Retinitis PigmentosaF30EY027706 · NEI · MEDICAL COLLEGE OF WISCONSIN · PI HUCKENPAHLER, ALISON L · 2017 to 2020
$183k
NEI NIH HHS F30 EY027706NEI NIH HHS P30 EY001931NEI NIH HHS P30 EY005722NEI NIH HHS P30 EY026877NEI NIH HHS R01 EY017607NEI NIH HHS R21 EY027086NEI NIH HHS R21 EY029804NEI NIH HHS U01 EY025477NIBIB NIH HHS T32 EB001040NIGMS NIH HHS T32 GM080202
6 · The paper itself

Abstract

Quantification of the human rod and cone photoreceptor mosaic in adaptive optics scanning light ophthalmoscope (AOSLO) images is useful for the study of various retinal pathologies. Subjective and time-consuming manual grading has remained the gold standard for evaluating these images, with no well validated automatic methods for detecting individual rods having been developed. We present a novel deep learning based automatic method, called the rod and cone CNN (RAC-CNN), for detecting and classifying rods and cones in multimodal AOSLO images. We test our method on images from healthy subjects as well as subjects with achromatopsia over a range of retinal eccentricities. We show that our method is on par with human grading for detecting rods and cones.

Identifiers

PMID31452977
PMCPMC6701534

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.