Evidence map›Paper›PMID 31452935›Full record

ArticleNPJ genomic medicine2019

Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes.

Pamela Feliciano, Xueya Zhou, Irina Astrovskaya, Tychele N Turner, Tianyun Wang, Leo Brueggeman, Rebecca Barnard, Alexander Hsieh, LeeAnne Green Snyder, Donna M Muzny and 9 more

Open access · goldAbstract read
In one paragraph

Article in NPJ genomic medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 161 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
161citing papers in PubMed, 3 pooled it
19.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

161 citing papers in PubMed, 3 syntheses or guidelines pooled it, 267 citations in OpenAlex.

  1. Pooled it
  2. International journal of molecular sciences · 2024
    Pooled it
  3. Potential of Salivary Biomarkers in Autism Research: A Systematic Review.International journal of molecular sciences · 2021
    Pooled it
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  20. Role and Impact of theInternational journal of molecular sciences · 2026
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101 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 20 institutions in 1 country.

Pamela Feliciano *1Simons Foundation, New York, NY 10010 USA.
Xueya Zhou *2Department of Systems Biology, Columbia University, New York, NY 10032 USA.ORCID 0000-0003-2350-081X
Irina Astrovskaya *1Simons Foundation, New York, NY 10010 USA.ORCID 0000-0001-5328-4631
Tychele N Turner *3Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195 USA.ORCID 0000-0001-8246-6477
Tianyun Wang3Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195 USA.
Leo Brueggeman4Department of Psychiatry, University of Iowa Carver College of Medicine, Iowa City, IA 52242 USA.
Rebecca Barnard5Department of Molecular and Medical Genetics, Oregon Health & Science University, Portland, OR 97239 USA.
Alexander Hsieh2Department of Systems Biology, Columbia University, New York, NY 10032 USA.ORCID 0000-0003-4227-1952
LeeAnne Green Snyder1Simons Foundation, New York, NY 10010 USA.
Donna M Muzny6Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030 USA.
Aniko Sabo6Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030 USA.
SPARK Consortium
Richard A Gibbs6Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030 USA.
Evan E Eichler3Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195 USA.ORCID 0000-0002-8246-4014
Brian J O'Roak5Department of Molecular and Medical Genetics, Oregon Health & Science University, Portland, OR 97239 USA.ORCID 0000-0002-4141-0095
Jacob J Michaelson4Department of Psychiatry, University of Iowa Carver College of Medicine, Iowa City, IA 52242 USA.ORCID 0000-0001-9713-0992
Natalia Volfovsky1Simons Foundation, New York, NY 10010 USA.
Yufeng Shen2Department of Systems Biology, Columbia University, New York, NY 10032 USA.ORCID 0000-0002-1299-5979
Wendy K Chung1Simons Foundation, New York, NY 10010 USA.
Simons Foundation · USBaylor College of Medicine · USUniversity of California, Los Angeles · USKennedy Krieger Institute · USBoston Children's Hospital · USRush University Medical Center · USColumbia University · USNationwide Children's Hospital · USUniversity of Minnesota · USUniversity of Washington · USEmory University · USUniversity of California, Davis · USUniversity of North Carolina at Chapel Hill · USCincinnati Children's Hospital Medical Center · USUniversity of Miami · USChildren's Hospital of Philadelphia · USOregon Health & Science University · USUniversity of California San Diego · USUniversity of Iowa · USJackson Memorial Hospital · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007337 · NIGMS · UNIVERSITY OF IOWA · PI GEYER, PAMELA K., LENTZ, STEVEN R · 1985 to 2020
$15.9M
Mechanisms of Brain Dysmorphology in MN1 C-Terminal Truncation Syndrome, a Novel Intellectual Developmental Disability Disorder P50HD103524 · NICHD · UNIVERSITY OF WASHINGTON · PI DANIEL DOHERTY · 2020 to 2026
$9.9M
Sporadic Mutations and Autism Spectrum DisordersR01MH101221 · NIMH · UNIVERSITY OF WASHINGTON · PI EICHLER, EVAN · 2013 to 2025
$9.2M
NRSA Training CoreTL1TR001875 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SPANN, MARISA N, TAYLOR, JACQUELYN Y · 2016 to 2025
$8.9M
Intellectual and Developmental Disabilities Research CenterU54HD083091 · NICHD · UNIVERSITY OF WASHINGTON · PI GURALNICK, MICHAEL J · 2014 to 2019
$7.9M
Understanding the biology of language impairment through whole genome sequencingR01DC014489 · NIDCD · UNIVERSITY OF IOWA · PI MICHAELSON, JACOB JAMES · 2016 to 2020
$3.1M
Developmental Functional Genomics in ASD ToddlersR01MH110558 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI COURCHESNE, ERIC, LEWIS, NATHAN ENOCH · 2016 to 2020
$3.0M
Integrate cancer genomics data in geneticstudies and diagnosis of developmental disordersR01GM120609 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SHEN, YUFENG · 2017 to 2021
$1.7M
Estimating the impact of genetic variants on the brain in space and timeR01MH105527 · NIMH · UNIVERSITY OF IOWA · PI MICHAELSON, JACOB JAMES · 2015 to 2017
$1.2M
Nature and contribution of noncoding, regulatory mutations in neurodevelopmental disordersR00MH117165 · NIMH · WASHINGTON UNIVERSITY · PI TURNER, TYCHELE NAOMI · 2019 to 2021
$743k
Nature and contribution of noncoding, regulatory mutations in neurodevelopmental disordersK99MH117165 · NIMH · UNIVERSITY OF WASHINGTON · PI TURNER, TYCHELE NAOMI · 2018 to 2018
$92k
NCATS NIH HHS TL1 TR001875NICHD NIH HHS P50 HD103524NICHD NIH HHS U54 HD083091NIDCD NIH HHS R01 DC014489NIGMS NIH HHS R01 GM120609NIGMS NIH HHS T32 GM007337NIMH NIH HHS K99 MH117165NIMH NIH HHS R00 MH117165NIMH NIH HHS R01 MH101221NIMH NIH HHS R01 MH105527NIMH NIH HHS R01 MH110558
6 · The paper itself

Abstract

Autism spectrum disorder (ASD) is a genetically heterogeneous condition, caused by a combination of rare de novo and inherited variants as well as common variants in at least several hundred genes. However, significantly larger sample sizes are needed to identify the complete set of genetic risk factors. We conducted a pilot study for SPARK (SPARKForAutism.org) of 457 families with ASD, all consented online. Whole exome sequencing (WES) and genotyping data were generated for each family using DNA from saliva. We identified variants in genes and loci that are clinically recognized causes or significant contributors to ASD in 10.4% of families without previous genetic findings. In addition, we identified variants that are possibly associated with ASD in an additional 3.4% of families. A meta-analysis using the TADA framework at a false discovery rate (FDR) of 0.1 provides statistical support for 26 ASD risk genes. While most of these genes are already known ASD risk genes,

Indexed as

Autism spectrum disordersBehavioural geneticsMedical genomics

Identifiers

PMID31452935
PMCPMC6707204
OpenAlexW2969366465

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.