Evidence map›Paper›PMID 31449969›Full record

ArticleBiochimica et biophysica acta. Molecular basis of disease2019

Multi-omics studies in cellular models of methylmalonic acidemia and propionic acidemia reveal dysregulation of serine metabolism.

Arianna Franca Anzmann, Sneha Pinto, Veronica Busa, James Carlson, Susan McRitchie, Susan Sumner, Akhilesh Pandey, Hilary J Vernon

Open access · greenAbstract read
In one paragraph

Article in Biochimica et biophysica acta. Molecular basis of disease, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 33 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 2 countries.

Arianna Franca AnzmannDepartment of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, United States of America.
Sneha PintoInstitute of Bioinformatics, Bengalaru, India; Manipal Academy of Higher Education (MAHE), Manipal 576104, India.
Veronica BusaDepartment of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, United States of America.
James CarlsonLECO Corporation, St. Joseph, MI, United States of America; RTI International, Research Triangle Park, NC, USA.
Susan McRitchieRTI International, Research Triangle Park, NC, USA; University of North Carolina at Chapel Hill, Nutrition Research Institute, Eastern Regional Comprehensive Metabolomics Resource Core, University of North Carolina at Chapel Hill, United States of America.
Susan SumnerRTI International, Research Triangle Park, NC, USA; University of North Carolina at Chapel Hill, Nutrition Research Institute, Eastern Regional Comprehensive Metabolomics Resource Core, University of North Carolina at Chapel Hill, United States of America.
Akhilesh PandeyLaboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, United States of America.
Hilary J VernonDepartment of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, United States of America; Department of Neurogenetics, Kennedy Krieger Institute, Baltimore, MD, United States of America. Electronic address: Hvernon1@jhmi.edu.
Johns Hopkins University · USUniversity of North Carolina at Chapel Hill · USKennedy Krieger Institute · USManipal Academy of Higher Education · INMayo Clinic in Florida · USRTI International · US

Funding

Metabolic Studies in Disorders of Branch Chain Amino Acid MetabolismK08HD073492 · NICHD · JOHNS HOPKINS UNIVERSITY · PI VERNON, HILARY · 2012 to 2016
$684k
NICHD NIH HHS K08 HD073492
6 · The paper itself

Abstract

backgroundMethylmalonic acidemia (MMA) and propionic acidemia (PA) are related disorders of mitochondrial propionate metabolism, caused by defects in methylmalonyl-CoA mutase (MUT) and propionyl-CoA carboxylase (PCC), respectively. These biochemical defects lead to a complex cascade of downstream metabolic abnormalities, and identification of these abnormal pathways has important implications for understanding disease pathophysiology. Using a multi-omics approach in cellular models of MMA and PA, we identified serine and thiol metabolism as important areas of metabolic dysregulation.

methodsWe performed global proteomic analysis of fibroblasts and untargeted metabolomics analysis of plasma from individuals with MMA to identify novel pathways of dysfunction. We probed these novel pathways in CRISPR-edited, MUT and PCCA null HEK293 cell lines via targeted metabolomics, gene expression analysis, and flux metabolomics tracing utilization of

resultsProteomic analysis of fibroblasts identified upregulation of multiple proteins involved in serine synthesis and thiol metabolism including: phosphoserine amino transferase (PSAT1), cystathionine beta synthase (CBS), and mercaptopyruvate sulfurtransferase (MPST). Metabolomics analysis of plasma revealed significantly increased levels of cystathionine and glutathione, central metabolites in thiol metabolism. CRISPR-edited MUT and PCCA HEK293 cells recapitulate primary defects of MMA and PA and have upregulation of transcripts associated with serine and thiol metabolism including PSAT1.

conclusionWe identified abnormal serine metabolism as a novel area of cellular dysfunction in MMA and PA, thus introducing a potential new target for therapeutic investigation.

Indexed as

Amino Acid Metabolism, Inborn ErrorsCells, CulturedFibroblastsHEK293 CellsHumansMetabolomeMetabolomicsPropionic AcidemiaProteomeProteomicsSerineProteomeSerineMethylmalonic acidemiaPropionic acidemiaSerine metabolism

Identifiers

PMID31449969
PMCPMC6923996
OpenAlexW2969442883

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.