Evidence map›Paper›PMID 31449567›Full record

ArticlePloS one2019

Comparative multi-omics systems analysis reveal the glycolysis / gluconeogenesis signal pathway play an important role in virulence attenuation in fish-derived GBS YM001.

Yu Liu, Liping Li, Ting Huang, Rui Wang, Wanwen Liang, Qiong Yang, Aiying Lei, Ming Chen

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Re-framing the importance of Group BInfection and immunity · 2024
    Review
  3. Article
  4. The Interaction between Phagocytes andAnimals : an open access journal from MDPI · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Yu LiuGuangxi Academy of Fishery Sciences, Nanning,China,P.R. China.
Liping LiGuangxi Academy of Fishery Sciences, Nanning,China,P.R. China.
Ting HuangGuangxi Academy of Fishery Sciences, Nanning,China,P.R. China.
Rui WangGuangxi Academy of Fishery Sciences, Nanning,China,P.R. China.
Wanwen LiangGuangxi Academy of Fishery Sciences, Nanning,China,P.R. China.
Qiong YangGuangxi Academy of Fishery Sciences, Nanning,China,P.R. China.
Aiying LeiGuangxi Academy of Fishery Sciences, Nanning,China,P.R. China.
Ming ChenGuangxi Academy of Fishery Sciences, Nanning,China,P.R. China.ORCID 0000-0003-4954-6998
Guangxi Academy of Fishery Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Streptococcus agalactiae(GBS) is a seriously threat to the farmed tilapia, and oral vaccination was considered to be the most desirable means which requires deep understanding of virulence mechanism of the fish-derived GBS. Our previous genome study of the fish-derived attenuated strain YM001 showed that there were two large deletions in YM001 compared to its parental virulent strain HN016. In this study, a combined transcriptomic and proteomic analysis was performed on YM001 and HN016 strains, and the important genes were verified by RT-qPCR in bacteria strains and infected-tilapia tissues. Overall, we have shown that a total of 958 genes and 331 proteins were significantly differential expressed between YM001 and HN016. By functional annotation of these DEGs and DEPs, genes that were enriched in pentose phosphate pathway(pgm, ptsG, pgi pfkA, fbaA and FBP3) and pyruvate metabolism pathway(pdhA, pdhB, pdhC and pdhD) were identifed as important candidate genes for leads low growth ability in attenuated strain, which may be an important reasons leading virulence attenuation in the end. The expression levels the candidate genes in pentose phosphate pathway and pyruvate metabolism pathway were significant differential expressed in tilapia' brain and spleen when infected with YM001 and HN016. Our study indicated that the pentose phosphate pathway and pyruvate metabolism pathway that affecting the growth of the strain may be one of the important reasons for the virulence attenuation in HN016.

Indexed as

GenomicsGluconeogenesisGlycolysisSignal TransductionSystems AnalysisAnimalsFish DiseasesProteomeReproducibility of ResultsRNAStreptococcal InfectionsStreptococcus agalactiaeTilapiaTranscriptomeVirulenceProteomeRNA

Identifiers

PMID31449567
PMCPMC6709914
OpenAlexW2970553650

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.