Evidence map›Paper›PMID 31448840›Full record

ArticleHuman mutation2020

Xq22 deletions and correlation with distinct neurological disease traits in females: Further evidence for a contiguous gene syndrome.

Hadia Hijazi, Fernanda S Coelho, Claudia Gonzaga-Jauregui, Laura Bernardini, Soe S Mar, Melanie A Manning, Andrea Hanson-Kahn, SakkuBai Naidu, Siddharth Srivastava, Jennifer A Lee and 19 more

Open access · greenAbstract read
In one paragraph

Article in Human mutation, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Function and regulation of the mitochondrial stress response.Nature structural & molecular biology · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Microdeletion in distal PLP1 enhancers causes hereditary spastic paraplegia 2.Annals of clinical and translational neurology · 2023
    Article
  9. Review
  10. PLP1 gene mutations cause spastic paraplegia type 2 in three families.Annals of clinical and translational neurology · 2023
    Article
  11. Article
  12. Review
  13. Article
  14. 3'UTR Deletion ofDiagnostics (Basel, Switzerland) · 2022
    Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 15 institutions in 5 countries.

Hadia HijaziDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.ORCID 0000-0002-2206-8730
Fernanda S CoelhoPrograma de Pós-Graduação em Genética Departmento de Biologia Geral, UFMG, Belo Horizonte, Minas Gerais, Brazil.
Claudia Gonzaga-JaureguiRegeneron Genetics Center, Regeneron Pharmaceuticals, Inc, Tarrytown, New York.ORCID 0000-0002-4667-3679
Laura BernardiniMedical Genetics Division, IRCCS "Casa Sollievo della Sofferenza" Foundation, San Giovanni Rotondo (FG), Italy.ORCID 0000-0002-3554-2817
Soe S MarDepartment of Neurology, Washington University School of Medicine, St. Louis, Missouri.
Melanie A ManningDivision of Medical Genetics, Department of Pediatrics, Stanford University School of Medicine, Palo Alto, California.
Andrea Hanson-KahnDivision of Medical Genetics, Department of Pediatrics, Stanford University School of Medicine, Palo Alto, California.ORCID 0000-0002-1735-5655
SakkuBai NaiduDepartments of Neurology and Pediatrics, Johns Hopkins University School of Medicine, Baltimore, Maryland.
Siddharth SrivastavaDepartment of Neurology, Boston Children's Hospital, Boston, Massachusetts.
Jennifer A LeeMolecular Diagnostic Laboratory, Greenwood Genetic Center, Greenwood, South Carolina.ORCID 0000-0003-2890-7483
Julie R JonesMolecular Diagnostic Laboratory, Greenwood Genetic Center, Greenwood, South Carolina.
Michael J FriezMolecular Diagnostic Laboratory, Greenwood Genetic Center, Greenwood, South Carolina.
Thomas AlbericoNemours Biomedical Research, Nemours/Alfred I. duPont Hospital for Children, Wilmington, Delaware.
Barbara TorresMedical Genetics Division, IRCCS "Casa Sollievo della Sofferenza" Foundation, San Giovanni Rotondo (FG), Italy.
Ping FangClinical Genomics, WuXi NextCODE, Cambridge, Massachusetts.
Sau Wai CheungDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Xiaofei SongDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Angelique Davis-WilliamsNemours Biomedical Research, Nemours/Alfred I. duPont Hospital for Children, Wilmington, Delaware.
Carly JornlinNemours Biomedical Research, Nemours/Alfred I. duPont Hospital for Children, Wilmington, Delaware.
Patricia A WightDepartment of Physiology and Biophysics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, Arkansas.
Pankaj PatyalDepartment of Physiology and Biophysics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, Arkansas.
Jennifer TaubeNemours Biomedical Research, Nemours/Alfred I. duPont Hospital for Children, Wilmington, Delaware.
Andrea PorettiDepartments of Neurology and Pediatrics, Johns Hopkins University School of Medicine, Baltimore, Maryland.
Ken InoueDepartment of Mental Retardation and Birth Defect Research, National Institute of Neuroscience, National Center of Neurology and Psychiatry, Kodaira, Japan.
Feng ZhangState Key Laboratory of Genetic Engineering at School of Life Sciences, Obstetrics and Gynecology Hospital, Institute of Reproduction and Development, Fudan University, Shanghai, China.
Davut PehlivanDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Claudia M B CarvalhoDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.ORCID 0000-0002-2090-298X
Grace M HobsonNemours Biomedical Research, Nemours/Alfred I. duPont Hospital for Children, Wilmington, Delaware.ORCID 0000-0002-5275-5953
James R LupskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.ORCID 0000-0001-9907-9246
Baylor College of Medicine · USAlfred I. duPont Hospital for Children · USGreenwood Genetic Center · USCasa Sollievo della Sofferenza · ITJoint Commission · USPalo Alto University · USUniversity of Arkansas for Medical Sciences · USBoston Children's Hospital · USFudan University · CNFundação Oswaldo Cruz · BRJohns Hopkins University · USKennedy Krieger Institute · USNational Center of Neurology and Psychiatry · JPRegeneron (United States) · USWashington University in St. Louis · US

Funding

Predictive Modeling & Optimal Control Framework for Model-Based Epidemic Response in DelawareP20GM103446 · NIGMS · UNIVERSITY OF DELAWARE · PI MELINDA K DUNCAN · 2012 to 2026
$67.2M
Baylor-Johns Hopkins Center for Mendelian GeneticsUM1HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2016 to 2020
$14.5M
STRUCTURAL VARIATION IN NEUROLOGICAL DISEASER35NS105078 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI LUPSKI, JAMES R. · 2018 to 2025
$6.0M
Center for Pediatric Research Pilot ProgramP30GM114736 · NIGMS · NEMOURS CHILDREN'S HOSPITAL, DELAWARE · PI SHAFFER, THOMAS H · 2015 to 2019
$5.1M
Nonrecurrent rearrangements, genome architecture and neurodegenerative disease.R01NS058529 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI LUPSKI, JAMES R. · 2009 to 2017
$5.0M
MUTATIONAL SIGNATURE(S) OF HUMAN GENOMIC REARRANGEMENT MECHANISMSR01GM106373 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI HASTINGS, PHILIP JOHN, LUPSKI, JAMES R. · 2014 to 2022
$3.1M
Molecular genetics of Pelizaeus-Merzbacher diseaseR01NS058978 · NINDS · NEMOURS CHILDREN'S HOSPITAL, DELAWARE · PI HOBSON, GRACE M. · 2009 to 2013
$1.1M
NHGRI NIH HHS UM1 HG006542NIGMS NIH HHS P20 GM103446NIGMS NIH HHS P30 GM114736NIGMS NIH HHS R01 GM106373NINDS NIH HHS R01 NS058529NINDS NIH HHS R01 NS058978NINDS NIH HHS R35 NS105078
6 · The paper itself

Abstract

Xq22 deletions that encompass PLP1 (Xq22-PLP1-DEL) are notable for variable expressivity of neurological disease traits in females ranging from a mild late-onset form of spastic paraplegia type 2 (MIM# 312920), sometimes associated with skewed X-inactivation, to an early-onset neurological disease trait (EONDT) of severe developmental delay, intellectual disability, and behavioral abnormalities. Size and gene content of Xq22-PLP1-DEL vary and were proposed as potential molecular etiologies underlying variable expressivity in carrier females where two smallest regions of overlap (SROs) were suggested to influence disease. We ascertained a cohort of eight unrelated patients harboring Xq22-PLP1-DEL and performed high-density array comparative genomic hybridization and breakpoint-junction sequencing. Molecular characterization of Xq22-PLP1-DEL from 17 cases (eight herein and nine published) revealed an overrepresentation of breakpoints that reside within repeats (11/17, ~65%) and the clustering of ~47% of proximal breakpoints in a genomic instability hotspot with characteristic non-B DNA density. These findings implicate a potential role for genomic architecture in stimulating the formation of Xq22-PLP1-DEL. The correlation of Xq22-PLP1-DEL gene content with neurological disease trait in female cases enabled refinement of the associated SROs to a single genomic interval containing six genes. Our data support the hypothesis that genes contiguous to PLP1 contribute to EONDT.

Indexed as

Chromosome DeletionChromosomes, Human, XGenetic Association StudiesGenetic Predisposition to DiseaseQuantitative Trait, HeritableChildChild, PreschoolChromosome BreakpointsChromosome MappingComparative Genomic HybridizationFemaleHumansMaleNervous System DiseasesPedigreePhenotypeBEX3contiguous gene deletion syndromeintrachromosomal repeatsPLP1sex limited traitsTCEAL1

Identifiers

PMID31448840
PMCPMC6953250
OpenAlexW2970442076

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.