Evidence map›Paper›PMID 31448544›Full record

ArticlePlant biotechnology journal2020

Molecular insight into cotton leaf curl geminivirus disease resistance in cultivated cotton (Gossypium hirsutum).

Syed Shan-E-Ali Zaidi, Rubab Zahra Naqvi, Muhammad Asif, Susan Strickler, Sara Shakir, Muhammad Shafiq, Abdul Manan Khan, Imran Amin, Bharat Mishra, M Shahid Mukhtar and 4 more

Abstract read
In one paragraph

Article in Plant biotechnology journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

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  14. Cotton heterosis and hybrid cultivar development.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Syed Shan-E-Ali ZaidiNational Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan.ORCID 0000-0002-2976-4624
Rubab Zahra NaqviNational Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan.
Muhammad AsifNational Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan.
Susan StricklerBoyce Thompson Institute, Ithaca, NY, USA.
Sara ShakirNational Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan.ORCID 0000-0002-8830-5989
Muhammad ShafiqNational Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan.ORCID 0000-0002-1308-1538
Abdul Manan KhanNational Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan.
Imran AminNational Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan.
Bharat MishraDepartment of Biology, University of Alabama at Birmingham, Birmingham, AL, USA.
M Shahid MukhtarDepartment of Biology, University of Alabama at Birmingham, Birmingham, AL, USA.
Brian E SchefflerGenomics and Bioinformatics Research Unit, United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Stoneville, MS, USA.
Jodi A SchefflerCrop Genetics Research Unit, United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Stoneville, MS, USA.
Lukas A MuellerBoyce Thompson Institute, Ithaca, NY, USA.
Shahid MansoorNational Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan.ORCID 0000-0001-7418-1826

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cultivated cotton (Gossypium hirsutum) is the most important fibre crop in the world. Cotton leaf curl disease (CLCuD) is the major limiting factor and a threat to textile industry in India and Pakistan. All the local cotton cultivars exhibit moderate to no resistance against CLCuD. In this study, we evaluated an exotic cotton accession Mac7 as a resistance source to CLCuD by challenging it with viruliferous whiteflies and performing qPCR to evaluate the presence/absence and relative titre of CLCuD-associated geminiviruses/betasatellites. The results indicated that replication of pathogenicity determinant betasatellite is significantly attenuated in Mac7 and probably responsible for resistance phenotype. Afterwards, to decipher the genetic basis of CLCuD resistance in Mac7, we performed RNA sequencing on CLCuD-infested Mac7 and validated RNA-Seq data with qPCR on 24 independent genes. We performed co-expression network and pathway analysis for regulation of geminivirus/betasatellite-interacting genes. We identified nine novel modules with 52 hubs of highly connected genes in network topology within the co-expression network. Analysis of these hubs indicated the differential regulation of auxin stimulus and cellular localization pathways in response to CLCuD. We also analysed the differential regulation of geminivirus/betasatellite-interacting genes in Mac7. We further performed the functional validation of selected candidate genes via virus-induced gene silencing (VIGS). Finally, we evaluated the genomic context of resistance responsive genes and found that these genes are not specific to A or D sub-genomes of G. hirsutum. These results have important implications in understanding CLCuD resistance mechanism and developing a durable resistance in cultivated cotton.

Indexed as

BegomovirusDisease ResistanceGene SilencingGenes, PlantGossypiumIndiaPakistanPlant DiseasesGossypium hirsutumleaf curl diseaseplant virus resistancetranscriptomeWGCNA

Identifiers

PMID31448544
PMCPMC7004920

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.