ArticleFrontiers in veterinary science2019
A Microbiomic Analysis of a Pasture-Raised Broiler Flock Elucidates Foodborne Pathogen Ecology Along the Farm-To-Fork Continuum.
Article in Frontiers in veterinary science, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- Detection and characterization of Campylobacter in air samples from poultry houses using shot-gun metagenomics - a pilot study.BMC microbiology · 2024Article
- 16S amplicon-based microbiome biomapping of a commercial broiler hatchery.Animal microbiome · 2024Article
- Exploring Pathogen Presence Prediction in Pastured Poultry Farms through Transformer-Based Models and Attention Mechanism Explainability.Microorganisms · 2024Article
- Microbial contamination pathways in a poultry abattoir provided clues on the distribution and persistence ofApplied and environmental microbiology · 2024Article
- Research advancements on the diversity and host interaction of gut microbiota in chickens.Frontiers in veterinary science · 2024Review
- Predicting foodborne pathogens and probiotics taxa within poultry-related microbiomes using a machine learning approach.Animal microbiome · 2023Article
- Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillance.Scientific reports · 2023Article
- An ensemble learning approach to identify pastured poultry farm practice variables and soil constituents that promoteHeliyon · 2022Article
- Preharvest Environmental and Management Drivers of Multidrug Resistance in Major Bacterial Zoonotic Pathogens in Pastured Poultry Flocks.Microorganisms · 2022Article
- Communicating the utility of the microbiome and bioinformatics to small flock poultry producers.Poultry science · 2022Review
- Considerations and best practices in animal science 16S ribosomal RNA gene sequencing microbiome studies.Journal of animal science · 2022Review
- Parallel Sequencing Reveals Campylobacter spp. in Commercial Meat Chickens Less than 8 Days Old.Applied and environmental microbiology · 2021Article
- Detection of Campylobacter jejuni diversity by clustered regularly interspaced short palindromic repeats (CRISPR) from an animal farm.Veterinary medicine and science · 2021Article
- Using farm management practices to predict Campylobacter prevalence in pastured poultry farms.Poultry science · 2021Article
- Environmental Impact on Differential Composition of Gut Microbiota in Indoor Chickens in Commercial Production and Outdoor, Backyard Chickens.Microorganisms · 2020Article
- Composition and Function of Chicken Gut Microbiota.Animals : an open access journal from MDPI · 2020Review
Corrections and comments
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
While conventionally grown poultry continues to dominate the U. S. poultry industry, there is an increasing demand for locally-grown, "all natural" alternatives. The use of next generation sequencing allows for not only the gross (e.g., community structure) but also fine-scale (e.g., taxa abundances) examination of these complex microbial communities. This data provides a better understanding of how a pasture flock's microbiome changes throughout the production life cycle and how that change in microbial ecology changes foodborne pathogens in alternative poultry production systems. In order to understand this ecology better, pooled broiler samples were taken during the entire flock life cycle, from pre-hatch gastrointestinal samples (
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