Evidence map›Paper›PMID 31447307›Full record

ArticleCell host & microbe2019

Structural Basis for Tetherin Antagonism as a Barrier to Zoonotic Lentiviral Transmission.

Cosmo Z Buffalo, Christina M Stürzel, Elena Heusinger, Dorota Kmiec, Frank Kirchhoff, James H Hurley, Xuefeng Ren

Open access · bronzeAbstract read
In one paragraph

Article in Cell host & microbe, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
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  14. Profile of James H. Hurley.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  15. Review
  16. Review
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  18. Review
  19. Structural basis of CD4 downregulation by HIV-1 Nef.Nature structural & molecular biology · 2020
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Cosmo Z BuffaloDepartment of Molecular and Cell Biology and California Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, CA 94720, USA.
Christina M StürzelInstitute of Molecular Virology, Ulm University Medical Center, 89081 Ulm, Germany.
Elena HeusingerInstitute of Molecular Virology, Ulm University Medical Center, 89081 Ulm, Germany.
Dorota KmiecInstitute of Molecular Virology, Ulm University Medical Center, 89081 Ulm, Germany.
Frank KirchhoffInstitute of Molecular Virology, Ulm University Medical Center, 89081 Ulm, Germany.
James H HurleyDepartment of Molecular and Cell Biology and California Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, CA 94720, USA; Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA. Electronic address: jimhurley@berkeley.edu.
Xuefeng RenDepartment of Molecular and Cell Biology and California Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, CA 94720, USA. Electronic address: snowren@berkeley.edu.
Universität Ulm · DEQB3 · USUniversity of California, Berkeley · US

Funding

X-ray Screening and Rapid Structure DeterminationP50GM082250 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KROGAN, NEVAN J · 2007 to 2018
$48.8M
Allostery and Hijacking of Host Membrane Traffic by HIV-1 Accessory ProteinsR01AI120691 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI HURLEY, JAMES H · 2015 to 2024
$6.1M
Mechanisms for HIV-1 Nef Hijacking of the Clathrin PathwayF32GM125209 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BUFFALO, COSMO ZEPHYRUS · 2018 to 2018
$59k
NIAID NIH HHS R01 AI120691NIGMS NIH HHS F32 GM125209NIGMS NIH HHS P50 GM082250
6 · The paper itself

Abstract

Tetherin is a host defense factor that physically prevents virion release from the plasma membrane. The Nef accessory protein of simian immunodeficiency virus (SIV) engages the clathrin adaptor AP-2 to downregulate tetherin via its DIWK motif. As human tetherin lacks DIWK, antagonism of tetherin by Nef is a barrier to simian-human transmission of non-human primate lentiviruses. To determine the molecular basis for tetherin counteraction, we reconstituted the AP-2 complex with a simian tetherin and SIV Nef and determined its structure by cryoelectron microscopy (cryo-EM). Nef refolds the first α-helix of the β2 subunit of AP-2 to a β hairpin, creating a binding site for the DIWK sequence. The tetherin binding site in Nef is distinct from those of most other Nef substrates, including MHC class I, CD3, and CD4 but overlaps with the site for the restriction factor SERINC5. This structure explains the dependence of SIVs on tetherin DIWK and consequent barrier to human transmission.

Indexed as

Adaptor Protein Complex 2Adaptor Protein Complex beta SubunitsAnimalsAntimicrobial Cationic PeptidesBinding SitesBone Marrow Stromal Antigen 2CD3 ComplexCD4 AntigensCell MembraneCryoelectron MicroscopyDown-RegulationGene Products, nefHEK293 CellsHistocompatibility Antigens Class IHumansLentivirus InfectionsAdaptor Protein Complex 2Adaptor Protein Complex beta SubunitsAntimicrobial Cationic PeptidesAP2B1 protein, humanBone Marrow Stromal Antigen 2CD3 ComplexCD4 AntigensGene Products, nefHistocompatibility Antigens Class IMembrane ProteinsSERINC5 protein, humanadaptor proteinclathrincryo-EMHIVhost-factor restrictionhydrogen-deuterium exchangeSIVtetherintrafficking

Identifiers

PMID31447307
PMCPMC6742535
OpenAlexW2969677846

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.