ArticleBMC plant biology2019
Gene co-expression network analysis reveals pathways associated with graft healing by asymmetric profiling in tomato.
Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.
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Who cites it
32 citing papers in PubMed, 65 citations in OpenAlex.
- Plant Regeneration: Influencing Factors, Regulatory Networks, and Epigenetic Mechanisms.International journal of molecular sciences · 2026Review
- Dynamic characterization of graft union formation in Sapindus mukorossi: role of SmNDUFS4.Plant cell reports · 2026Article
- Integrated multiomics analysis reveals the molecular mechanism of light intensity-enhanced healing in cotyledon-less splice grafted watermelon.Horticulture research · 2026Article
- A Statistical Mechanics Model to Decode Tissue Crosstalk During Graft Formation.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026Article
- Organ-level gene-regulatory networks inferred from transcriptomic data reveal context-specific regulation and highlight novel regulators of ripening and ABA-mediated responses in tomato.Plant communications · 2025Article
- Temporal-Resolution Dynamics of Polyphenolic During the Pepper Graft Healing.Plants (Basel, Switzerland) · 2025Article
- Analysis of the Differences AmongPlants (Basel, Switzerland) · 2025Article
- Graft union formation involves interactions among bud signals, carbon availability, dormancy release, wound responses and non-self-communication in grapevine.The Plant journal : for cell and molecular biology · 2025Article
- Here comes the sun: integration of light, temperature, and auxin during herbaceous plant grafting.Planta · 2025Review
- The biology of grafting and its applications in studying information exchange between plants.Nature plants · 2025Review
- Autophagy is induced during plant grafting to promote wound healing.Nature communications · 2025Article
- PdMATE16 and PdMATE35 are essential for the accumulation of multiple flavonoids in tree peonies.Frontiers in plant science · 2025Article
- Integrated transcriptome and DNA methylome analysis reveal the biological base of increased resistance to gray leaf spot and growth inhibition in interspecific grafted tomato scions.BMC plant biology · 2024Article
- Genome-wide identification and expression analysis of xyloglucan endotransglucosylase/hydrolase genes family in Salicaceae during grafting.BMC genomics · 2023Article
- Article
- Brassinosteroids affect wood development and properties ofFrontiers in plant science · 2023Article
- Article
- Systematic Analysis of the Grafting-Related Glucanase-Encoding GH9 Family Genes in Pepper, Tomato and Tobacco.Plants (Basel, Switzerland) · 2022Article
- Transcriptome Profiling to Dissect the Role of Genome Duplication on Graft Compatibility Mechanisms in Watermelon.Biology · 2022Article
- Gene regulatory networks for compatible versus incompatible grafts identify a role for SlWOX4 during junction formation.The Plant cell · 2022Article
Corrections and comments
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Authors and funding
3 authors at 1 institution in 1 country.
Funding
Abstract
backgroundThe ability of severed rootstocks and shoots to re-establish vascular connections is used to generate grafted plants that combine desirable traits from both scions and rootstocks. Clarifying the mechanisms of graft healing is essential for its further application. We performed RNA sequencing of internodes near the cut position, making a distinction between separated or grafted tissues above and below the cut, in order to obtain a genetic description of graft union formation.
resultsUsing weighted gene co-expression analysis, variable transcripts were clustered into 10 distinct co-expression networks (modules) based on expression profiles, and genes with the most "hubness" ("hub" genes show the most connections in a network) within each module were predicted. A large proportion of modules were related to Position, and represent asymmetric expression networks from different pathways. Expression of genes involved in auxin and sugar transport and signaling, and brassinosteroid biosynthesis was increased above the cut, while stress response genes were up-regulated below the cut. Some modules were related to graft union formation, among which oxidative detoxification genes were co-expressed along with both wounding response and cell wall organization genes.
conclusionsThe present work provides a comprehensive understanding of graft healing-related gene networks in tomato. Also, the candidate pathways and hub genes identified here will be valuable for future studies of grafting in tomato.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.