Evidence map›Paper›PMID 31444367›Full record

ArticleScientific reports2019

Comparative linkage mapping of diploid, tetraploid, and hexaploid Avena species suggests extensive chromosome rearrangement in ancestral diploids.

Robert G Latta, Wubishet A Bekele, Charlene P Wight, Nicholas A Tinker

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Breeding oat for resistance to the crown rust pathogen Puccinia coronata f. sp. avenae: achievements and prospects.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Review
  5. Changing patterns of genetic differentiation in the slender wild oat,Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  6. Article
  7. New Insights into the Genomic Structure ofPlants (Basel, Switzerland) · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. QTL Mapping for Resistance to Cankers Induced byPathogens (Basel, Switzerland) · 2020
    Article
  12. Article
  13. High-Density Genetic Linkage Mapping ofFrontiers in plant science · 2020
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Robert G LattaDept. of Biology, Dalhousie University, 1355 Oxford St., Halifax, NS, B3H 4R2, Canada. Robert.Latta@Dal.ca.
Wubishet A BekeleOttawa Research and Development Centre, Agriculture & Agri-Food Canada, 960 Carling Ave., Ottawa, Ontario, K1A 0C6, Canada.
Charlene P WightOttawa Research and Development Centre, Agriculture & Agri-Food Canada, 960 Carling Ave., Ottawa, Ontario, K1A 0C6, Canada.ORCID http://orcid.org/0000-0003-1410-5631
Nicholas A TinkerOttawa Research and Development Centre, Agriculture & Agri-Food Canada, 960 Carling Ave., Ottawa, Ontario, K1A 0C6, Canada.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genus Avena (oats) contains diploid, tetraploid and hexaploid species that evolved through hybridization and polyploidization. Four genome types (named A through D) are generally recognized. We used GBS markers to construct linkage maps of A genome diploid (Avena strigosa x A. wiestii, 2n = 14), and AB genome tetraploid (A. barbata 2n = 28) oats. These maps greatly improve coverage from older marker systems. Seven linkage groups in the tetraploid showed much stronger homology and synteny with the A genome diploids than did the other seven, implying an allopolyploid hybrid origin of A. barbata from distinct A and B genome diploid ancestors. Inferred homeologies within A. barbata revealed that the A and B genomes are differentiated by several translocations between chromosomes within each subgenome. However, no translocation exchanges were observed between A and B genomes. Comparison to a consensus map of ACD hexaploid A. sativa (2n = 42) revealed that the A and D genomes of A. sativa show parallel rearrangements when compared to the A genomes of the diploids and tetraploids. While intergenomic translocations are well known in polyploid Avena, our results are most parsimoniously explained if translocations also occurred in the A, B and D genome diploid ancestors of polyploid Avena.

Indexed as

Chromosome MappingDiploidyPhylogenyPolyploidyTetraploidyAvenaChromosomes, PlantGene RearrangementGenome, Plant

Identifiers

PMID31444367
PMCPMC6707241

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.