Evidence map›Paper›PMID 31444226›Full record

ArticleeNeuro

Blue Light Increases Neuronal Activity-Regulated Gene Expression in the Absence of Optogenetic Proteins.

Kelsey M Tyssowski, Jesse M Gray

Open access · goldAbstract read
In one paragraph

Article in eNeuro. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 58 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Photosensitivity of an aging brain.bioRxiv : the preprint server for biology · 2025
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Optogenetics Neuromodulation of the Nose.Behavioural neurology · 2024
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Analysis of Airway Vagal Neurons.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Kelsey M TyssowskiDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115.ORCID 0000-0002-5324-4872
Jesse M GrayDepartment of Genetics, Harvard Medical School, Boston, Massachusetts 02115 Gray@genetics.med.harvard.edu.
Harvard University · US

Funding

Genomic mechanisms of firing rate homeostasisR01MH116223 · NIMH · HARVARD MEDICAL SCHOOL · PI DYMECKI, SUSAN M. · 2018 to 2022
$3.0M
NIMH NIH HHS R01 MH116223
6 · The paper itself

Abstract

Optogenetics is widely used to control diverse cellular functions with light, requiring experimenters to expose cells to bright light. Because extended exposure to visible light can be toxic to cells, it is important to characterize the effects of light stimulation on cellular function in the absence of optogenetic proteins. Here we exposed mouse cortical cultures with no exogenous optogenetic proteins to several hours of flashing blue, red, or green light. We found that exposing these cultures to as short as 1 h of blue light, but not red or green light, results in an increase in the expression of neuronal activity-regulated genes. Our findings suggest that blue light stimulation is ill suited to long-term optogenetic experiments, especially those that measure transcription, and they emphasize the importance of performing light-only control experiments in samples without optogenetic proteins.

Indexed as

LightAnimalsCells, CulturedChannelrhodopsinsFemaleGene ExpressionMaleMiceNeuronsOptogeneticsPhotic StimulationChannelrhodopsinsactivity-regulated genesimmediate early genesoptogeneticstranscription

Identifiers

PMID31444226
PMCPMC6751372
OpenAlexW2969787671

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.