Evidence map›Paper›PMID 31444105›Full record

ArticleMolecular cell2019

Evolution of Inosine-Specific Endonuclease V from Bacterial DNase to Eukaryotic RNase.

Jinjun Wu, Nadine L Samara, Isao Kuraoka, Wei Yang

Open access · greenAbstract readComparative Study
In one paragraph

Article in Molecular cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 58 citations in OpenAlex.

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  10. Structural basis of transcription: RNA polymerase II substrate binding and metal coordination using a free-electron laser.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  16. Regulation and functions of non-mNature reviews. Molecular cell biology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Jinjun WuLaboratory of Molecular Biology, NIDDK, NIH, Bethesda, MD 20892, USA.
Nadine L SamaraSection on Biological Chemistry, NIDCR, NIH, Bethesda, MD 20892, USA.
Isao KuraokaDepartment of Chemistry, Faculty of Science, Fukuoka University, 8-19-1 Nanakuma, Jonan-ku, Fukuoka 814-0180, Japan.
Wei YangLaboratory of Molecular Biology, NIDDK, NIH, Bethesda, MD 20892, USA. Electronic address: wei.yang@nih.gov.
Fukuoka University · JPNational Institute of Dental and Craniofacial Research · USNational Institutes of Health · US

Funding

Structural and mechanistic studies of RNase H and HIV reverse transcriptaseZIADK036144 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI YANG, WEI · 2009 to 2021
$4.2M
Structural and mechanistic studies of RNase H and HIV reverse transcriptaseZ01DK036144 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI YANG, WEI · 2007 to 2008
$601k
Intramural NIH HHS Z01 DK036144
6 · The paper itself

Abstract

Endonuclease V (EndoV) cleaves the second phosphodiester bond 3' to a deaminated adenosine (inosine). Although highly conserved, EndoV homologs change substrate preference from DNA in bacteria to RNA in eukaryotes. We have characterized EndoV from six different species and determined crystal structures of human EndoV and three EndoV homologs from bacteria to mouse in complex with inosine-containing DNA/RNA hybrid or double-stranded RNA (dsRNA). Inosine recognition is conserved, but changes in several connecting loops in eukaryotic EndoV confer recognition of 3 ribonucleotides upstream and 7 or 8 bp of dsRNA downstream of the cleavage site, and bacterial EndoV binds only 2 or 3 nt flanking the scissile phosphate. In addition to the two canonical metal ions in the active site, a third Mn

Indexed as

DNA RepairEvolution, MolecularAnimalsArgonaute ProteinsBacterial ProteinsCatalysisDeoxyribonuclease (Pyrimidine Dimer)DNA, BacterialHumansInosineMagnesiumManganeseMiceNucleic Acid ConformationProtein ConformationRibonuclease HArgonaute ProteinsBacterial ProteinsDeoxyribonuclease (Pyrimidine Dimer)DNA, BacterialInosineMagnesiumManganeseRibonuclease Hribonuclease HIRNAadenosine deaminationcatalysisDNaseevolutionmetal ionribonucleotide recognitionRNase

Identifiers

PMID31444105
PMCPMC6778043
OpenAlexW2969318199

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.