Evidence map›Paper›PMID 31443688›Full record

ArticleClinical epigenetics2019

Replicated methylation changes associated with eczema herpeticum and allergic response.

Meher Preethi Boorgula, Margaret A Taub, Nicholas Rafaels, Michelle Daya, Monica Campbell, Sameer Chavan, Aniket Shetty, Chris Cheadle, Sangjucta Barkataki, Jinshui Fan and 11 more

Open access · goldAbstract read
In one paragraph

Article in Clinical epigenetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 2 pooled it
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 2 syntheses or guidelines pooled it, 29 citations in OpenAlex.

  1. Classifying atopic dermatitis: a systematic review of phenotypes and associated characteristics.Journal of the European Academy of Dermatology and Venereology : JEADV · 2022
    Pooled it
  2. Pooled it
  3. Review
  4. Review
  5. Review
  6. Review
  7. The Genetics of Eczema Herpeticum.Clinical reviews in allergy & immunology · 2022
    Review
  8. Article
  9. Epigenetic Mechanisms in Allergy Development and Prevention.Handbook of experimental pharmacology · 2022
    Article
  10. Review
  11. Article
  12. Article
  13. Update on the pathogenesis of atopic dermatitis.Anais brasileiros de dermatologia
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 12 institutions in 1 country.

Meher Preethi BoorgulaUniversity of Colorado, Denver, CO, USA.
Margaret A TaubDepartment of Biostatistics, Bloomberg School of Public Health, Baltimore, MD, USA.
Nicholas RafaelsUniversity of Colorado, Denver, CO, USA.
Michelle DayaUniversity of Colorado, Denver, CO, USA.
Monica CampbellUniversity of Colorado, Denver, CO, USA.
Sameer ChavanUniversity of Colorado, Denver, CO, USA.
Aniket ShettyCenter for Patient Derived Models (CPDM), Dana-Farber Cancer Institute, Boston, MA, USA.
Chris CheadleElsevier Inc, Rockville, MD, USA.
Sangjucta BarkatakiQiagen Sciences Inc, Frederick, MD, USA.
Jinshui FanDepartment of Medicine, Johns Hopkins University, Baltimore, MD, USA.
Gloria DavidRho, Inc, Chapel Hill, NC, USA.
Terri H BeatyDepartment of Biostatistics, Bloomberg School of Public Health, Baltimore, MD, USA.
Ingo RuczinskiDepartment of Biostatistics, Bloomberg School of Public Health, Baltimore, MD, USA.
Jon HanifinOregon Health & Science University, Portland, OR, USA.
Lynda C SchneiderBoston Children's Hospital, Boston, MA, USA.
Richard L GalloUniversity of California San Diego, San Diego, CA, USA.
Amy S PallerNorthwestern University, Chicago, IL, USA.
Lisa A BeckUniversity of Rochester, Rochester, NY, USA.
Donald Y LeungNational Jewish Health, Denver, CO, USA.
Rasika A MathiasDepartment of Medicine, Johns Hopkins University, Baltimore, MD, USA.
Kathleen C BarnesUniversity of Colorado, Denver, CO, USA. kathleen.barnes@ucdenver.edu.
University of Colorado Denver · USJohns Hopkins University · USBoston Children's Hospital · USDana-Farber Cancer Institute · USNational Jewish Health · USNorthwestern University · USOregon Health & Science University · USQiagen (United States) · USRELX Group (United States) · USRho (United States) · USUniversity of California, San Diego · USUniversity of Rochester · US

Funding

Transplantation GroupUM2AI117870 · NIAID · RHO FEDERAL SYSTEMS DIVISION, INC. · PI DAVID, GLORIA · 2015 to 2023
$208.1M
Targeted Microbiome Transplant in Atopic DermatitisU19AI117673 · NIAID · NATIONAL JEWISH HEALTH · PI GEHA, RAIF SALIM · 2015 to 2019
$30.6M
NIAID NIH HHS U19 AI117673NIAID NIH HHS UM2 AI117870
6 · The paper itself

Abstract

backgroundAlthough epigenetic mechanisms are important risk factors for allergic disease, few studies have evaluated DNA methylation differences associated with atopic dermatitis (AD), and none has focused on AD with eczema herpeticum (ADEH+). We will determine how methylation varies in AD individuals with/without EH and associated traits. We modeled differences in genome-wide DNA methylation in whole blood cells from 90 ADEH+, 83 ADEH-, and 84 non-atopic, healthy control subjects, replicating in 36 ADEH+, 53 ADEH-, and 55 non-atopic healthy control subjects. We adjusted for cell-type composition in our models and used genome-wide and candidate-gene approaches.

resultsWe replicated one CpG which was significantly differentially methylated by severity, with suggestive replication at four others showing differential methylation by phenotype or severity. Not adjusting for eosinophil content, we identified 490 significantly differentially methylated CpGs (ADEH+ vs healthy controls, genome-wide). Many of these associated with severity measures, especially eosinophil count (431/490 sites).

conclusionsWe identified a CpG in IL4 associated with serum tIgE levels, supporting a role for Th2 immune mediating mechanisms in AD. Changes in eosinophil level, a measure of disease severity, are associated with methylation changes, providing a potential mechanism for phenotypic changes in immune response-related traits.

Indexed as

DNA MethylationCase-Control StudiesCpG IslandsDermatitis, AtopicEosinophilsEpigenesis, GeneticFemaleGenome-Wide Association StudyHumansImmunoglobulin EInterleukin-4Kaposi Varicelliform EruptionMaleSeverity of Illness IndexTh2 CellsIL4 protein, humanImmunoglobulin EInterleukin-4Atopic dermatitisDNA methylationEczema herpeticumHuman epigeneticsInfinium Methylation 450K arrayMethylation EPIC array

Identifiers

PMID31443688
PMCPMC6706929
OpenAlexW2969375765

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.