Evidence map›Paper›PMID 31442614›Full record

ArticleVirology2019

Efficient pre-catalytic conformational change of reverse transcriptases from SAMHD1 non-counteracting primate lentiviruses during dNTP incorporation.

Si'Ana A Coggins, Jessica M Holler, Jason T Kimata, Dong-Hyun Kim, Raymond F Schinazi, Baek Kim

Open access · hybridAbstract read
In one paragraph

Article in Virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Si'Ana A CogginsDepartment of Pediatrics, School of Medicine, Emory University, Atlanta, GA, 30322, USA.
Jessica M HollerDepartment of Pediatrics, School of Medicine, Emory University, Atlanta, GA, 30322, USA.
Jason T KimataDepartment of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, 77030, Texas, USA.
Dong-Hyun KimCollege of Pharmacy, Kyung Hee University, Seoul, 04427, South Korea.
Raymond F SchinaziDepartment of Pediatrics, School of Medicine, Emory University, Atlanta, GA, 30322, USA.
Baek KimDepartment of Pediatrics, School of Medicine, Emory University, Atlanta, GA, 30322, USA; College of Pharmacy, Kyung Hee University, Seoul, 04427, South Korea; Children's Healthcare of Atlanta, Atlanta, 30322, USA. Electronic address: baek.kim@emory.edu.
Emory University · USBaylor College of Medicine · USKyung Hee University · KR

Funding

WNV REPLIVAX VACCINE IN NON-HUMAN PRIMATESP51RR013986 · NCRR · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI GOLDBERG, ERWIN · 1999 to 2011
$79.1M
Virology and Molecular Biomarkers CoreP30AI050409 · NIAID · EMORY UNIVERSITY · PI Ann M Chahroudi, Colleen F Kelley · 2002 to 2026
$74.0M
Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Michael M Ittmann · 2007 to 2026
$73.9M
Lentivirus Replication Strategy and PathogenesisR01AI136581 · NIAID · EMORY UNIVERSITY · PI Baek Kim · 2018 to 2026
$3.9M
Towards Suppression and Elimination of HIV in the CNSR01MH116695 · NIMH · EMORY UNIVERSITY · PI SCHINAZI, RAYMOND FELIX, TYOR, WILLIAM R · 2018 to 2022
$3.4M
Bifunctional Chimeric Antigen Receptors for clearing HIVR33AI116167 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI KIMATA, JASON T. · 2018 to 2020
$1.5M
Replication and pathogenesis of pigtail-tropic HIV-1R56AI108467 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI KIMATA, JASON T. · 2014 to 2014
$510k
HIV-1 Resistance to Type I Interferon in MacaquesR21AI099007 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI KIMATA, JASON T. · 2012 to 2013
$430k
SAMHD1 controls dNTP pool and HIV sensitivity to NRTIsR01AI150451 · NIAID · EMORY UNIVERSITY · PI KIM, BAEK · 2019 to 2019
$311k
NCI NIH HHS P30 CA125123NCRR NIH HHS P51 RR013986NIAID NIH HHS P30 AI050409NIAID NIH HHS R01 AI136581NIAID NIH HHS R01 AI150451NIAID NIH HHS R21 AI099007NIAID NIH HHS R33 AI116167NIAID NIH HHS R56 AI108467NIMH NIH HHS R01 MH116695
6 · The paper itself

Abstract

Unlike HIV-1, HIV-2 and some SIV strains replicate at high dNTP concentrations even in macrophages due to their accessory proteins, Vpx or Vpr, that target SAMHD1 dNTPase for proteasomal degradation. We previously reported that HIV-1 reverse transcriptase (RT) efficiently synthesizes DNA even at low dNTP concentrations because HIV-1 RT displays faster pre-steady state k

Indexed as

AnimalsCell LineDeoxyribonucleotidesHumansKineticsLentiviruses, PrimatePrimatesProtein ConformationRNA-Directed DNA PolymeraseDeoxyribonucleotidesRNA-Directed DNA PolymeraseConformational changedNTPsLentivirusesMacrophagesReverse transcriptaseSAMHD1VprVpx

Identifiers

PMID31442614
PMCPMC6901729
OpenAlexW2967828499

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.